Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1204g00006 ATGGCACCACCAATAACGGACTCGGAACCAGAATCCGAAGCGCTGCGCCTCAAGGCCATGGCGGAGTCCAAGTTCAAAGCCTCCAACAACGCCAAATCCGCTCTCAAATACGCGAAGCGTGCGCAGCGTCTGTGCCCGCACCTCGACGGCGTGTCGGAGGCCGTCACTTCACTCACTGTCCTCGCCGCGTCGGACTGGTATAGTGCGCTCGGTGCTGAGCCCTTTGCAAACAGCAGCGTCATTCGGAGACAGTACAAGAAGCTCGCACTGCTCCTCCATCCCGACAAGAACCCCAACGTGGCGTCCGAGGAGGCCTTCAAGCTCGTCGGCGAGGCCTTCCACCTCCTTTCCGACCGGAGTCGCCGCCGAGAGTACGATGCCGAGCTCCGACAGAAGATCAAGGCGGAGAGCGAGACGTTCTGGACCGCCTGCTCCACTTGCAGGCTCCTTCACCAGTTTCAGAGAAAGTATATGGGTCAAGAATTGGTGTGCCCGAGTTGTGAGAAGAGTTTTACGGCTGTGGAAACGGTTCAGAGTGATGGGGATGGTGATGGGGAAGGTAGGGTTAGGAGTATGAGGTTGAAGTTGAAAGAGATAAATAAGAAGGAGAAAATTGGTGTGAGAGGGAAAGTGGATAATGAAGTGGGGGATGAGAAGGAAGGGAAATTGAGGAAGAGAATGCGTTCAGTTGGGGAGGTGTTGGAGAGGTCCAAACCTATTAAAAGGGTTAAAAATGGGGAGGAAATGATGACATTAGCTGAATTTCAGACTGAGGTGAGGAGAAAGTTGCAGGAAAAAAAGTTGAAGGAAAAAGAAAAGGAAAAGGAGGATGATAGAATTGAGAAGAGGAGCAATCGGGTGGAGAGGCGGCGGGCATTGAAAAACTCTGAAGGTTTAGAGGTTGGAGAGGGGAGGGCTTTGAAGAAGAGTGTGAGGCTTGGGATTGAGGAGAATCTTGTGGGTTTATCGAAGAGAAAGGGGTTGAGATCTGCGAGGCATAGGTATTCTGATAAAGGGGGGTTGGAAAACATGGCGGTGGTGGATTCAGATTTTTATGATTTTGACAAAGATAGAGTGGAGAAGAGTTTTAAGAAAGGTCAAGTGTGGGCAGTGTATGACGATGATGATGGAATGCCGAGGAATTATGCCCTGATTGATGAAACTCTTTCACTGAATCCTTTTGAAGTGAGATTAAGTTGGTTGGATGTACAGATCATTGGGGATGGGAGGATAGTTAGTAAGGAGAAAATGGGGTTTCATACACCTTGTGGGAGATTTAAGGTTGCCAGGAAGACTTCGGTGAATTCGGTAAATATATTTTCCCATGTTGTGGATTGTGACCGGGCAGCACGTGAACTTTACAAAATTTACCCCAAGAAAGGCTCAGTATGGGCGCTGCATGGCGAGGGAAGTATTGATGCAGAGGACCGCAAGAGATGCTATGACATTGTTGTATGTCTGACAAGTTACAATGAGGCAAATGGTCTGAGCATGGCGTATCTTGAGAAGGTTGATGGTTACAAGACAGTATTTAGGCGGCAAAAGAGGGGGAGTGGTGCTATTATATTTCTTGGGAAGGATGACATGTGCTTAGTTTCTCATCAAATTCCAGCACGGAAGCTTATTTGTGATGAAACCCCTGAACTGTTGAAAGACTGTTGGGAACTTGATCCCGCATCACTTCCTTCAGATTTACTTACTATTGGTGGCATTGATAATTGA 1722 0.4832 MAPPITDSEPESEALRLKAMAESKFKASNNAKSALKYAKRAQRLCPHLDGVSEAVTSLTVLAASDWYSALGAEPFANSSVIRRQYKKLALLLHPDKNPNVASEEAFKLVGEAFHLLSDRSRRREYDAELRQKIKAESETFWTACSTCRLLHQFQRKYMGQELVCPSCEKSFTAVETVQSDGDGDGEGRVRSMRLKLKEINKKEKIGVRGKVDNEVGDEKEGKLRKRMRSVGEVLERSKPIKRVKNGEEMMTLAEFQTEVRRKLQEKKLKEKEKEKEDDRIEKRSNRVERRRALKNSEGLEVGEGRALKKSVRLGIEENLVGLSKRKGLRSARHRYSDKGGLENMAVVDSDFYDFDKDRVEKSFKKGQVWAVYDDDDGMPRNYALIDETLSLNPFEVRLSWLDVQIIGDGRIVSKEKMGFHTPCGRFKVARKTSVNSVNIFSHVVDCDRAARELYKIYPKKGSVWALHGEGSIDAEDRKRCYDIVVCLTSYNEANGLSMAYLEKVDGYKTVFRRQKRGSGAIIFLGKDDMCLVSHQIPARKLICDETPELLKDCWELDPASLPSDLLTIGGIDN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1204g00006 573 Coils Coil 252 283 - -
Vium1204g00006 573 CDD DnaJ 65 118 IPR001623 -
Vium1204g00006 573 Gene3D DnaJ domain 52 147 IPR036869 -
Vium1204g00006 573 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Vium1204g00006 573 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vium1204g00006 573 PRINTS DnaJ domain signature 101 121 IPR001623 -
Vium1204g00006 573 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vium1204g00006 573 Pfam DnaJ domain 65 126 IPR001623 -
Vium1204g00006 573 SUPERFAMILY Chaperone J-domain 58 130 IPR036869 -
Vium1204g00006 573 SMART dnaj_3 64 121 IPR001623 -
Vium1204g00006 573 Pfam Domain of unknown function (DUF3444) 343 542 IPR024593 -
Vium1204g00006 573 PANTHER BNAC03G44070D PROTEIN 11 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1204g00006 Vium-Chr1204 106669 110791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1204g00006 5 178 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.732 1.60e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1204g00006 - - ccaj:109800659 853.588