Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1204g00005 ATGGGCAGTAGTGAGATGGATAAAGCTCCAAAAGAGAAGGAGTCAAAGACGCCACCACCTATGTCACAGGAGCAGTCTTCAACCACCGCTACTGGAACAATTAATCCTGATTGGCCTGGATTTCAGGCATATTCTCCTATACCTCCACACAGTTTCTTGGCATCAAGTCCACAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCATATGTTGCAATGTATCCACCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGCCCCTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGAAGCATGGAAGCCGATGGTAAGCCTCCTGAGGTGAAGGAAAAGTTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAGTAATGAACATGGTAAAACAACGGGAACATCTGCTAATGGAAATCATTCAAAGAGTGGTGATAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAAAATGACTCTCAATTGAAATCAGGGGGCAGACAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCACTTCAGCATATACTCCTCAAAATGGGGGCCTAAGTGCACCTCCTACTGCGGTCAATCAAACTCTGCCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCTTCCAACATTCCTGCACTTGCTAGAAAGGTTCCATCTACTGCAGTTGCTGGATCACGGGATAGTGTTCAATCACAACTCTGGCTACAGTTAGTGTTTGACACCCCATTTCTTGGCTCCCAGCCTGAAAACAAAGCCCAATCCATCCCTTTTGTTCTACTAGGGTTTCCACACATTTGGAAATCAGAAACGTAA 1002 0.4531 MGSSEMDKAPKEKESKTPPPMSQEQSSTTATGTINPDWPGFQAYSPIPPHSFLASSPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKSNEHGKTTGTSANGNHSKSGDSASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGTSAYTPQNGGLSAPPTAVNQTLPIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALARKVPSTAVAGSRDSVQSQLWLQLVFDTPFLGSQPENKAQSIPFVLLGFPHIWKSET 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1204g00005 333 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 290 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium1204g00005 333 MobiDBLite consensus disorder prediction 1 42 - -
Vium1204g00005 333 MobiDBLite consensus disorder prediction 19 38 - -
Vium1204g00005 333 MobiDBLite consensus disorder prediction 146 232 - -
Vium1204g00005 333 Pfam Disordered region downstream of MFMR 135 274 - -
Vium1204g00005 333 MobiDBLite consensus disorder prediction 1 18 - -
Vium1204g00005 333 MobiDBLite consensus disorder prediction 111 232 - -
Vium1204g00005 333 Pfam G-box binding protein MFMR 1 96 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1204g00005 Vium-Chr1204 91673 102634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1204g00005 1 299 bZIP Transcription Factor Family AT2G35530 62.903 9.69e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1204g00005 K09060 - gmx:100101882 548.125