Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1204g00004 ATGGGCAGTAGTGAGATGGATAAAGCTCCAAAAGAGAAGGAGTCAAAGACGCCACCACCTATGTCACAGGAGCAGTCTTCAACCACCGCTACTGGAACAATTAATCCTGATTGGCCTGGATTTCAGGCATATTCTCCTATACCTCCACACAGTTTCTTGGCATCAAGTCCACAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCATATGTTGCAATGTATCCACCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGCCCCTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGAAGCATGGAAGCCGATGGTAAGCCTCCTGAGGTGAAGGAAAAGTTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAGTAATGAACATGGTAAAACAACGGGAACATCTGCTAATGGAAATCATTCAAAGAGTGGTGATAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAAAATGACTCTCAATTGAAATCAGGGGGCAGACAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCACTTCAGCATATACTCCTCAAAATGGGGGCCTAAGTGCACCTCCTACTGCGGTCAATCAAACTCTGCCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCTTCCAACATTCCTGCACTTGCTAGAAAGGTTCCATCTACTGCAGTTGCTGGATCACGGGATAGTGTTCAATCACAACTCTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGAAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGTAAGCAGGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTCAGAAGTTAGCCGAATCAGGAGCGATTATGAGCAACTACTCTCCGAGAACACTGCTCTCAAGGAAAGGCTTGGGGAATTACCTGCTAATGATGATCATCAAAGGTCTGGGAGGAGTGATCAACATGTGGGTAATGATGCTCAACAGAATGGGCAGACAGAGGCTGTGCAGGGTGGTCACTAG 1221 0.466 MGSSEMDKAPKEKESKTPPPMSQEQSSTTATGTINPDWPGFQAYSPIPPHSFLASSPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKSNEHGKTTGTSANGNHSKSGDSASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGTSAYTPQNGGLSAPPTAVNQTLPIIPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALARKVPSTAVAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSDYEQLLSENTALKERLGELPANDDHQRSGRSDQHVGNDAQQNGQTEAVQGGH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1204g00004 406 MobiDBLite consensus disorder prediction 387 406 - -
Vium1204g00004 406 CDD bZIP_plant_GBF1 306 356 IPR045314 GO:0003700|GO:0006355
Vium1204g00004 406 MobiDBLite consensus disorder prediction 1 46 - -
Vium1204g00004 406 MobiDBLite consensus disorder prediction 365 406 - -
Vium1204g00004 406 SUPERFAMILY Leucine zipper domain 304 360 IPR046347 GO:0003700|GO:0006355
Vium1204g00004 406 MobiDBLite consensus disorder prediction 19 38 - -
Vium1204g00004 406 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 395 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium1204g00004 406 SMART brlzneu 301 365 IPR004827 GO:0003700|GO:0006355
Vium1204g00004 406 Pfam bZIP transcription factor 301 363 IPR004827 GO:0003700|GO:0006355
Vium1204g00004 406 Pfam Disordered region downstream of MFMR 135 274 - -
Vium1204g00004 406 Coils Coil 321 369 - -
Vium1204g00004 406 MobiDBLite consensus disorder prediction 371 386 - -
Vium1204g00004 406 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vium1204g00004 406 MobiDBLite consensus disorder prediction 1 18 - -
Vium1204g00004 406 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 308 323 IPR004827 GO:0003700|GO:0006355
Vium1204g00004 406 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 303 366 IPR004827 GO:0003700|GO:0006355
Vium1204g00004 406 Gene3D - 304 358 - -
Vium1204g00004 406 MobiDBLite consensus disorder prediction 146 233 - -
Vium1204g00004 406 MobiDBLite consensus disorder prediction 111 233 - -
Vium1204g00004 406 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1204g00004 Vium-Chr1204 90751 102626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1204g00004 1 380 bZIP Transcription Factor Family AT2G35530 63.224 2.14e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1204g00004 MFMR_assoc 2.3e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1204g00004 K09060 - gmx:778122 734.561