Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12047g00001 ATGCCTGCTACTCCTGCTGCTCCTATATCGACTGCAATTCCAATTAATTCATTCAGGACGCCAACTGGAGCTACTAATGGTGATTTGGGCACATCGAGGAGGAGTACCCGAAGTCGGGGACAGGTCGCACAGGAAGATGGCTACAGTAATGCTGTGATAGAGGAAGTTGAGGCAGATGCAACAACTGCGGCTAAAAGATCAAAGCGCAAGTTGCAGAACAAGATAAAGGGACCGCCGAGTGTTGGTTCTGGGGATGTTGATCCAGATGCAGTGGCTGCTGATATTCTCAAGTCACTTAACCCATTGGTTTTTAATGTACTAAATCAACCCGAAGGTAGCAGGGACTCAGTTGCATATACACTCATGATATATGAAGTAATGCGAAGGAAGCTTGGACAAATTGAGGATTCAAATAGGGCTGCTAACGCTGTAGCAAAACGACCAGACTTGAGGGCAGGTGCAATTATGATGAATAAAGGTATTCGGACCAACAGCAAGAAACATATTGGACTTGTGTCTGGTGTTGAGATTGGGGATATTTTCTTTTTCAGATTTGAATTATGCTTAGTGGGTTTACATTCACCTTCTATGGCTGGAATTGATTACATCGGTACCAAAACCAGTCAAGAGGAAGAGCCCTTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATGATGTGGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGATAACAGTGCTCATAGAGGTAACGAAGTGAGGGTAATTAGGGGTTTGAAGGATTTGTATCATCCAACGGGGAAGGTATATGTCTATGATGGTCTTTACAAGATTCAAGATTCCTGGGTGGACAAATCAAAATCTGGTTTCAATGTGTTCAAGTATAAATTAGGCAGGTTGCCTGGACAGCCTCCAGCATATATGATTTGGAAATCCATTCAACAATGGACTGAGAAATCTGCTCCAAGAGCTGGGGTTATATTGCCTGATCTTACTTCTGGGGCCGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATGCCGAGAAGGGCCCTGCATATTTCACTTACCACCCAAATCTTAAGAATTTGAGGCCAACTGCTCCGCTGGAATCCTCTATTGGATGTTCTTGTATTGGTGGATGCCAACCTAACAATTCTAACTGTCCTTGTGTTCAAAAGAATGGTGGCTATCTACCATATTCTTCAGCTTCATTAATTGCAGACCTAAAATCTGTTATATATGAGTGTGGTCCTTCTTGTCAATGTCCTCCTAATTGCCGAAAAAGGATTTCTCAAAGTGGCTTGAAGTTTCGTTTGGAGGTTTATAAAACCAAGAATAAAGGATGGGCTCTTAGATCATGGGATGCTATTCGAGCAGGATCTTTCATATGTGAGTATGCTGGGGAAGTCATAGACAGTGCCAGAGTGGAGGAGGAGCTTGGTGGTGACAATCTTGATGATTACATTTTTGATTCTACTCGCATTTATCAACAACTGGAAGTTTTTCCAGGTGACACTGAAGCTCCAAAAATCCCATCCCCCCTATATATATCCGCAATTAATGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCATACATGAAAATAAGAATTTTTCAGATCTCCACATTGCTTTCTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTTTGATTATGGGACGGTTCTTCCTCTCAAGGCAGGTCATAGTAAAAAGAAATGCTTATGTGAATCTGTGAAATGCAGGGGTTACTTTTGTTAA 1854 0.4234 MPATPAAPISTAIPINSFRTPTGATNGDLGTSRRSTRSRGQVAQEDGYSNAVIEEVEADATTAAKRSKRKLQNKIKGPPSVGSGDVDPDAVAADILKSLNPLVFNVLNQPEGSRDSVAYTLMIYEVMRRKLGQIEDSNRAANAVAKRPDLRAGAIMMNKGIRTNSKKHIGLVSGVEIGDIFFFRFELCLVGLHSPSMAGIDYIGTKTSQEEEPLAVSIVSSGGYEDDVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALDNSAHRGNEVRVIRGLKDLYHPTGKVYVYDGLYKIQDSWVDKSKSGFNVFKYKLGRLPGQPPAYMIWKSIQQWTEKSAPRAGVILPDLTSGAEKVPVCLVNDVDAEKGPAYFTYHPNLKNLRPTAPLESSIGCSCIGGCQPNNSNCPCVQKNGGYLPYSSASLIADLKSVIYECGPSCQCPPNCRKRISQSGLKFRLEVYKTKNKGWALRSWDAIRAGSFICEYAGEVIDSARVEEELGGDNLDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYISAINEGNVARFMNHSCSPNVLWRPVIHENKNFSDLHIAFYAIRHIPPMMELTFDYGTVLPLKAGHSKKKCLCESVKCRGYFC 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12047g00001 617 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 47 609 - -
Vium12047g00001 617 SMART G9a_1 165 320 IPR003105 -
Vium12047g00001 617 SMART set_7 455 597 IPR001214 GO:0005515
Vium12047g00001 617 Gene3D SET domain 338 616 IPR046341 -
Vium12047g00001 617 SMART preset_2 345 439 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium12047g00001 617 ProSiteProfiles YDG domain profile. 170 316 IPR003105 -
Vium12047g00001 617 SUPERFAMILY SET domain 331 597 IPR046341 -
Vium12047g00001 617 ProSiteProfiles Pre-SET domain profile. 391 452 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium12047g00001 617 Pfam SET domain 466 591 IPR001214 GO:0005515
Vium12047g00001 617 Pfam Pre-SET motif 349 447 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium12047g00001 617 ProSiteProfiles Post-SET domain profile. 601 617 IPR003616 -
Vium12047g00001 617 Gene3D - 152 337 IPR036987 -
Vium12047g00001 617 Pfam SAD/SRA domain 168 320 IPR003105 -
Vium12047g00001 617 MobiDBLite consensus disorder prediction 1 48 - -
Vium12047g00001 617 ProSiteProfiles SET domain profile. 455 591 IPR001214 GO:0005515
Vium12047g00001 617 MobiDBLite consensus disorder prediction 63 86 - -
Vium12047g00001 617 SUPERFAMILY PUA domain-like 152 335 IPR015947 -
Vium12047g00001 617 MobiDBLite consensus disorder prediction 10 45 - -
Vium12047g00001 617 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 153 335 - -
Vium12047g00001 617 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 32 616 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12047g00001 Vium-Chr12047 868 5258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12047g00001 104 616 Su(var)3-9 homologs AT5G04940 52.830 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium12047g00001 SAD_SRA 1.7e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12047g00001 K24405 - gmx:100786650 1050.81