Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12046g00001 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATAGCAGGCTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATCCCCCTCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCGCCCAAGACCCTCATGGCGACCAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTACGACAAAGGTCCAACAAAGAAGTAAGGAAGAAGGTTTATATCTGCCCCGAACAATCCTGCGTCCACCACGACCCTTCAAGAGCACTCGGCGATCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAATGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGCGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGAAAGGACAGCTTCATTACCCACAGAGCATTTTGCGATGCCTTGGCAGAAGAGAGTGCGAGACTCACATCAGTCACCTCAACAAATCTAAATTTCAAGAGCGAAGAGGGTGGTAATGTGATGAACTCGCAGGCTGGTTTGGGAGGGCATGGACTAATTGCAGCAGCAGCAGCAGCACAAAGTCTTCAAAATGTTTCTGGCATTCCACAATTCGGTCCACATGGTTTTCGCTTGGATTTTAATGGGATGGAACAACCAAGAGCTAGCTTGTCGCTGTGGTTGAACCAGGGGAATCCCCAGTTGAATAATAATAACAGTAATGTTAACGGCAACAATAATGGTACCGATGTGGGGCCCAATTACATGTCGTCATGCTCTTCTTCAGGTTTGCCTGATATTGTGCAAATGGCTCAGGCTAATGGTTTGATGGGTTCTACATCGATGGTGTCTAATTTTGGAGTACCTGCGGGTTCTAACTCAACCAGTGCAAATCTTTCTCTGTCGTCACTTCCTATTGGTAAAAGAGGGGAAGCAGGTGGAACTGTAGTGGACTTGGCGTCTATTTATAACTCAGAGGGTCCAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCGCAGATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTCAGTGTCATGAACTCACCTTCCTCGCAAACTACCAGTCTCAATAATAACAACAACGGCGCTGCAGCCATGATGCTGGGAAGTAATACCACTCCTGGAACCGATTTCACCTCAATGACGCATTCACCAAACGGTTTTGACCAACTCGTGATGCAAACCAATGCGCAGCTGCAAAGTGAGCCTGTGAAGTTAAAGCTTCGTTCAAGCGCCGTGGAGCACAATTTGACAAGGGATTTTCTCGGAGTCAGCGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGACCTCAGTTCCTACCCCAAGAACTCGCAAAGTTTGCTTCCATGGGGTCGCCTATGGGGTTGAGCCATTTCACAGGCAACCAATGA 1596 0.485 MQMMPGDPFSLSTSIAGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTNLNFKSEEGGNVMNSQAGLGGHGLIAAAAAAQSLQNVSGIPQFGPHGFRLDFNGMEQPRASLSLWLNQGNPQLNNNNSNVNGNNNGTDVGPNYMSSCSSSGLPDIVQMAQANGLMGSTSMVSNFGVPAGSNSTSANLSLSSLPIGKRGEAGGTVVDLASIYNSEGPNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFSVMNSPSSQTTSLNNNNNGAAAMMLGSNTTPGTDFTSMTHSPNGFDQLVMQTNAQLQSEPVKLKLRSSAVEHNLTRDFLGVSGGGGGGGGGGGGGGGPQFLPQELAKFASMGSPMGLSHFTGNQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12046g00001 531 SMART c2h2final6 64 86 IPR013087 -
Vium12046g00001 531 SMART c2h2final6 105 135 IPR013087 -
Vium12046g00001 531 SMART c2h2final6 140 160 IPR013087 -
Vium12046g00001 531 FunFam protein indeterminate-domain 12-like 43 111 - -
Vium12046g00001 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Vium12046g00001 531 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Vium12046g00001 531 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Vium12046g00001 531 Gene3D Classic Zinc Finger 42 116 - -
Vium12046g00001 531 MobiDBLite consensus disorder prediction 487 508 - -
Vium12046g00001 531 Gene3D Classic Zinc Finger 117 197 - -
Vium12046g00001 531 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vium12046g00001 531 MobiDBLite consensus disorder prediction 1 48 - -
Vium12046g00001 531 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Vium12046g00001 531 MobiDBLite consensus disorder prediction 1 25 - -
Vium12046g00001 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 500 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12046g00001 Vium-Chr12046 8308 11855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12046g00001 1 260 IDZ Gene Family AT5G03150 63.287 1.60e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium12046g00001 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12046g00001 K25870 - gmx:100801182 761.525