Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12043g00002 ATGGCCACGACAAGGTCACCTAACCATTTTTCCGAGGAAGGCGCCGATCCCACGCCGTTCCTCGGCGCCTCTTCCGATGACTCTAACTCCGGCCGCCGTCTCCTCCGCCGCCCCAGCCTACGCGAGGCGGCGCGCTTCCTTCGGCAGGCGAGCGGACGCCGACTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAGCAATTGGAAGAAAGACAGAGCGATTGGGCCTATTCGAAGCCCGTCGTAGTCTTGGATATTCTTTGGAACTTCGCGTTCGTCGCCGCGGCCGCCACCGTCTTGATTCTTAGTCGCAACGAGAATCCGAATATGCCCCTGCGGTGTTGGATTGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGGGTGCGTGTGCGTTGAGTACCGGAGGCGCCAGCGACGCCGTGAACAGTCCAGCGCCGCCGTTGCTGTTGGCGGCAGCGGGGATTTGAGTTCGGCTTCGATGGAAGGCTCTGGACACTACGTGTCGTTGCCGCAGCTCGAGGACGATACTATAAGTATGGCCAAGCATTTGGAGTCAGCCAACACAATGTTTTCATTCATTTGGTGGGTTGTTGGATTCTATTGGATATCAGCTGACAGTGAAGCTCTGGTCCAACATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATCATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAGGATATTGAGCAATTGTCAAAGTTCAAGTTCCAGAGAACCGAAATTAATGAGAAACTTGCTGGGAATACACAAGGAACTGCTGGAGGAATAATGACTGAATGCGATACTGATTCTCCCATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGATGGCGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTGTGCAAGTACAATATCTTGAAAAGTACCGGTCACGGTCAAGACGAAGTTTAG 1137 0.5215 MATTRSPNHFSEEGADPTPFLGASSDDSNSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVAAAATVLILSRNENPNMPLRCWIVGYAMQCVLHVGCVCVEYRRRQRRREQSSAAVAVGGSGDLSSASMEGSGHYVSLPQLEDDTISMAKHLESANTMFSFIWWVVGFYWISADSEALVQHSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTEINEKLAGNTQGTAGGIMTECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTGHGQDEV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12043g00002 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 376 IPR013083 -
Vium12043g00002 378 CDD RING-H2_RNF6-like 322 364 - -
Vium12043g00002 378 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Vium12043g00002 378 MobiDBLite consensus disorder prediction 1 36 - -
Vium12043g00002 378 SMART ring_2 323 363 IPR001841 -
Vium12043g00002 378 SUPERFAMILY RING/U-box 314 371 - -
Vium12043g00002 378 PANTHER TARGET OF ERK KINASE MPK-1 51 368 - -
Vium12043g00002 378 FunFam E3 ubiquitin-protein ligase At1g12760 309 374 - -
Vium12043g00002 378 Pfam Ring finger domain 322 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12043g00002 Vium-Chr12043 221 4580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12043g00002 24 371 C3H Transcription Factor Family AT1G68070 49.718 1.69e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12043g00002 - - gmx:100779757 682.945