Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12043g00001 ATGGCCACGACAAGGTCACCTAACCATTTTTCCGAGGAAGGCGCCGATCCCACGCCGTTCCTCGGCGCCTCTTCCGATGACTCTAACTCCGGCCGCCGTCTCCTCCGCCGCCCCAGCCTACGCGAGGCGGCGCGCTTCCTTCGGCAGGCGAGCGGACGCCGACTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAGCAATTGGAAGAAAGACAGAGCGATTGGGCCTATTCGAAGCCCGTCGTAGTCTTGGATATTCTTTGGAACTTCGCGTTCGTCGCCGCGGCCGCCACCGTCTTGATTCTTAGTCGCAACGAGAATCCGAATATGCCCCTGCGGTGTTGGATTGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGGGTGCGTGTGCGTTGAGTACCGGAGGCGCCAGCGACGCCGTGAACAGTCCAGCGCCGCCGTTGCTGTTGGCGGCAGCGGGGATTTGAGTTCGGCTTCGATGGAAGGCTCTGGACACTACGTGTCGTTGCCGCAGCTCGAGGACGATACTATAAGTATGGCCAAGCATTTGGAGTCAGCCAACACAATGTTTTCATTCATTTGGTGGGTTGTTGGATTCTATTGGATATCAGCTGACAGTGAAGCTCTGGTCCAACATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATCATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGCAGGAAGGGGCATCAAAAGAGGATATTGAGCAATTGTCAAAGTTCAAGTTCCAGAGAACCGAAATTAATGAGAAACTTGCTGGGAATACACAAGGAACTGCTGGAGGAATAATGACTGAATGCGATACTGATTCTCCCATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGATGGCGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTGTGCAAGTACAATATCTTGAAAAGTACCGGTCACGGTCAAGACGAAGTTTAG 1140 0.5219 MATTRSPNHFSEEGADPTPFLGASSDDSNSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVAAAATVLILSRNENPNMPLRCWIVGYAMQCVLHVGCVCVEYRRRQRRREQSSAAVAVGGSGDLSSASMEGSGHYVSLPQLEDDTISMAKHLESANTMFSFIWWVVGFYWISADSEALVQHSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQQEGASKEDIEQLSKFKFQRTEINEKLAGNTQGTAGGIMTECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTGHGQDEV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12043g00001 379 PANTHER TARGET OF ERK KINASE MPK-1 51 369 - -
Vium12043g00001 379 MobiDBLite consensus disorder prediction 1 36 - -
Vium12043g00001 379 SUPERFAMILY RING/U-box 315 372 - -
Vium12043g00001 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 377 IPR013083 -
Vium12043g00001 379 CDD RING-H2_RNF6-like 323 365 - -
Vium12043g00001 379 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Vium12043g00001 379 SMART ring_2 324 364 IPR001841 -
Vium12043g00001 379 Pfam Ring finger domain 323 365 IPR001841 -
Vium12043g00001 379 FunFam E3 ubiquitin-protein ligase At1g12760 310 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12043g00001 Vium-Chr12043 221 4581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12043g00001 24 372 C3H Transcription Factor Family AT1G68070 49.577 1.08e-113 333