Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1202g00001 ATGTTGAGATTAATAAGACTCCTAATGCATGTCAAGAGATACCGAGCCTTTGTAGCAACTTTCTTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGCATTTATTGTTCGCTTGGTGTTCAGATTTTTGGTGGAATTGTTAATGCTGGAAACCCGGAATTGGAATCAACAGCTCTTGCTGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCTAATGGAATAGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGATGAAGTGATGACGAGTTACACGGAACTAACTGGGACTGCGTGGACTTATTTGTACTTCATTAGCTTCTACTTAGTTACTGTTTTGCTGCTTTTGAACTTGGTTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGATCTTGAGTCTTCGGAAAGTTCTGAAGGAACGAACAAGGATGTTGAAGGAGATAAATACCGAAAACGGTCTATTGGCACTAAAACACGAAGCCAGAGGGTTGATACTCTTCTTCATCATATGTTGAGTGCCGAGTTGTGCCAAAATCAGCCTTCCAATACAGCAACTTGA 597 0.3953 MLRLIRLLMHVKRYRAFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELESTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYTELTGTAWTYLYFISFYLVTVLLLLNLVIAFVLEAFFAEMDLESSESSEGTNKDVEGDKYRKRSIGTKTRSQRVDTLLHHMLSAELCQNQPSNTAT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1202g00001 198 Gene3D - 16 179 - -
Vium1202g00001 198 FunFam Two pore calcium channel protein 1 18 175 - -
Vium1202g00001 198 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 193 IPR044581 GO:0005245
Vium1202g00001 198 Pfam Ion transport protein 1 138 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1202g00001 198 SUPERFAMILY Voltage-gated potassium channels 2 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1202g00001 Vium-Chr1202 3840 10956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1202g00001 1 198 Ion Channels AT4G03560 67.172 5.28e-92 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1202g00001 K16900 - vum:124825335 385.185