Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12020g00006 ATGGAGGAGAATGATGTCTTGACGCCTTTGTGGACAGGACATTGGGGAAACTTGCCTTTAGATCCATCGTGGCACGTTTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTGATAGAGATGGATGATGTGTTGAGGAAGATTCAGATTCAGAATTACTTGCCTCTGTTGGTGGGCTCTTACCCTTCATCTGTTGAGCACATAAGGTGCATGCAGCAACATGATCATAAGAATCAGTCTTATGTGTTTCTGGCTGGGGATGAAGTTGAAAATGGACACGTTACCAAAGCACAACCACCCTTATATTTGGGAGATGACTGTGATTTCACCCCTCAAAAGCCTCTCAGCAATGCATACAAATCGAACATTAACAACATCCTCTCATGGCTATCTTCAGATGCAGCCACAAGCAGAGGCTATAACTACAAAAGCATAGGCAACACCACCCCTTTGTATGGCCTCTATGACTGCCGTGGTGATGTGGTTGGCTACTTCTGCCAATTCTGTGTCTCCGCTGCTTCCAGAAGAGTCCTTCAGCACTGCCCTAACAGGGTTTCTGCTGTAATGTACTATAACTTCTGCCTTCTCAGGTACTCCGATCAGAACTTCATTGGGAATGTCACAATAAACCATCCAAGGCATCATGTTGGGAACAAAACTGTGTCTGATATAGAAGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACAAGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGTTTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAGTTGCAGACAGTGCTTGGAGGCAATGCTAGCACAGGTACGACACTTCAGTTACTTTTTCTTGATTTGCAATCATACAAAATTTCATGACTGTTTACTCAATTTGATCAATTTGTCAAAAATTTCTTTTNTGGGAAAAACACAGCTCAATGTGAGATCAGTATATTTCTTTGTTTTCATGTTCTTGGTAAGCTTCAAATCACTAGTTACCAAAGCACAACCACCCTTATATTTGGGAGATGACTGTGATTTCACCCCTCAAAAGCCTCTCAGCAATGCATACAAATCGAACATTAACAACATCCTCTCATGGCTATCTTCAGATGCAGCCACAAGCAGAGGCTATAACTACAAAAGCATAGGCAACACCACCCCTTTGTATGGCCTCTATGACTGCCGTGGTGATGTGGTTGGCTACTTCTGCCAATTCTGTGTCTCCGCTGCTTCCAGAAGAGTCCTTCAGCACTGCCCTAACAGGGTTTCTGCTGTAATGTACTATAACTTCTGCCTTCTCAGGTACTCCAATCAGAACTTCATTGGGAATGTCACAATAAACCATCCAAGGCATCATGTTGGGAACAAAACTGTGTCTGATATAGAAGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACAAGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGTTTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAGTTGCAGACAGTGCTTGGAGGCAATGCTAGCACAGGTTCCAAAATGTTGTGAACACAAGTTGGGGTGGCTTGTAGGAACTGCAAGTTGTCACATAAAGTATGATGATTATATGTTCTACCTTTTCAACAACCAATCATATATTGTGCCTGGTTTAACAGCTAAACATGGGGATGATACTAAGTCAAGAAACTTGATCATTGGATTGAGTGTGGTAGGGTTGGTAGCTCTGTGTTTGAGAATATATTGCTTATGTTACTGGAATAGAGTAAGAAAAGATGGGTTGATAACTGATACTATTCCTCTGTCTGCATATACAAATTTGCCTATAATCCCATTAATCACTATTCTTGAGAGTACTGATAACTTCTCAGAAGCATCCAAATTAGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCCGATGGAAGACAAGTTGCAGTCAAAAGGCTATCAAAAGCTTCTAGTCAAGGCACAGAGGAGTTTAAGAATGAAGTAACATTTATAGCCAAATTGCAACATTGCAACCTTGTAAGACTTGTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTTGTTTATGAGTATTTATCAAATGGAAGTCTTGACTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATTATTAATGGAATAGCAAGAGGTCTTTTATACCTTCATGAGGATTCTAGACTCAAGGTAATCCACAGAGATCTCAAAGCTAGCAATGTTCTGTTAGATGATGAAATGAATCCAAAGATATCAGATTTTGGATTAGCTAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAAGCGAGTAATGGGCACTTATGGATACATGGCTCCGGAGTATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGTTTTGGAGTACTTGTTCTAGAAATCATTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAAAACATGGTCAAAGTCTTCTTTTATATAGTTGGAGAATGTGGTGCGCAGGAAAATGTTTGGAATTGATGGATCCAGTGTTAGAAAATTCCTACATATCCAATGAAGTTGAGAAGTTTGTACAGATTGGTTTATTGTGTGTTCAAGAAGCAGCAACAGCTAGACCAATCATGTCCACTGTCATGTTATTGTTGGCAACTGATGTGATGAACATTCCCAAACCCAACAAACCTGCATTCTCAGTTGGAAGAATGACCTCAGTGGAAACTTCTGCTTCAAAAACTTCCAAAAGTGTTTCCATTAATGATGCATCAATCTCTAGTATTGCACCAAGGTGA 2901 0.4081 MEENDVLTPLWTGHWGNLPLDPSWHVLGFGYTNVDPQLIEMDDVLRKIQIQNYLPLLVGSYPSSVEHIRCMQQHDHKNQSYVFLAGDEVENGHVTKAQPPLYLGDDCDFTPQKPLSNAYKSNINNILSWLSSDAATSRGYNYKSIGNTTPLYGLYDCRGDVVGYFCQFCVSAASRRVLQHCPNRVSAVMYYNFCLLRYSDQNFIGNVTINHPRHHVGNKTVSDIEEIQKGEDFMRSLIRKATVETNKLYYMDGFNLSSTQRRYGLVQCTRDLTSESCRQCLEAMLAQVRHFSYFFLICNHTKFHDCLLNLINLSKISFXGKTQLNVRSVYFFVFMFLVSFKSLVTKAQPPLYLGDDCDFTPQKPLSNAYKSNINNILSWLSSDAATSRGYNYKSIGNTTPLYGLYDCRGDVVGYFCQFCVSAASRRVLQHCPNRVSAVMYYNFCLLRYSNQNFIGNVTINHPRHHVGNKTVSDIEEIQKGEDFMRSLIRKATVETNKLYYMDGFNLSSTQRRYGLVQCTRDLTSESCRQCLEAMLAQVPKCCEHKLGWLVGTASCHIKYDDYMFYLFNNQSYIVPGLTAKHGDDTKSRNLIIGLSVVGLVALCLRIYCLCYWNRVRKDGLITDTIPLSAYTNLPIIPLITILESTDNFSEASKLGEGGFGPVYKGILPDGRQVAVKRLSKASSQGTEEFKNEVTFIAKLQHCNLVRLVACCLEENEKILVYEYLSNGSLDFHLFDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTKRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSKHGQSLLLYSWRMWCAGKCLELMDPVLENSYISNEVEKFVQIGLLCVQEAATARPIMSTVMLLLATDVMNIPKPNKPAFSVGRMTSVETSASKTSKSVSINDASISSIAPR 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12020g00006 966 Pfam Salt stress response/antifungal 232 287 IPR002902 -
Vium12020g00006 966 Pfam Salt stress response/antifungal 482 562 IPR002902 -
Vium12020g00006 966 Pfam Salt stress response/antifungal 365 451 IPR002902 -
Vium12020g00006 966 Pfam Salt stress response/antifungal 115 200 IPR002902 -
Vium12020g00006 966 FunFam Cysteine-rich receptor-like protein kinase 10 463 564 - -
Vium12020g00006 966 SUPERFAMILY Protein kinase-like (PK-like) 625 919 IPR011009 -
Vium12020g00006 966 SMART serkin_6 648 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12020g00006 966 ProSiteProfiles Protein kinase domain profile. 648 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12020g00006 966 Gene3D Transferase(Phosphotransferase) domain 1 724 927 - -
Vium12020g00006 966 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 622 723 - -
Vium12020g00006 966 ProSiteProfiles Gnk2-homologous domain profile. 350 453 IPR002902 -
Vium12020g00006 966 FunFam Cysteine-rich receptor-like protein kinase 28 353 452 - -
Vium12020g00006 966 FunFam Cysteine-rich receptor-like protein kinase 28 103 202 - -
Vium12020g00006 966 CDD STKc_IRAK 654 915 - -
Vium12020g00006 966 Pfam Protein tyrosine and serine/threonine kinase 652 865 IPR001245 GO:0004672|GO:0006468
Vium12020g00006 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Vium12020g00006 966 Gene3D Phosphorylase Kinase; domain 1 622 723 - -
Vium12020g00006 966 ProSiteProfiles Gnk2-homologous domain profile. 459 564 IPR002902 -
Vium12020g00006 966 ProSiteProfiles Gnk2-homologous domain profile. 100 203 IPR002902 -
Vium12020g00006 966 Gene3D - 357 453 IPR038408 -
Vium12020g00006 966 Gene3D - 464 564 IPR038408 -
Vium12020g00006 966 Gene3D - 107 203 IPR038408 -
Vium12020g00006 966 Gene3D - 214 302 IPR038408 -
Vium12020g00006 966 ProSiteProfiles Gnk2-homologous domain profile. 209 315 IPR002902 -
Vium12020g00006 966 FunFam Liguleless narrow1 724 927 - -
Vium12020g00006 966 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 367 962 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12020g00006 Vium-Chr12020 59025 66219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12020g00006 331 966 Receptor kinase-like Gene Family AT4G05200 39.701 7.92e-158 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium12020g00006 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12020g00006 - - vum:124821055 1952.18