Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1201g00015 ATGGGTCGCTGCCGTGCTGCGTCGGCCACGGGCCCCGCCGACGATGACCCTAACCACAGGTTAAAGAGAAAAAGGGCCGCTTCAGAAAATTCAGAAACTTTAGCTACAGTCCAAGGGATAGCTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGTAACAAAGATATTTCGGGGAGGATTCGCATCAAGTGTGCTGTCTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCCATTGGTGCCGAGGTGACACCACACAAAAGCAATCATCCATATCGGGTTATGGATAATCTATGTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATCTTACTTCTAGAGGCTATTGAGATGTATGGATTTGGGAATTGGAATGAAGTCGCAGAATATGTTGGAACTAAAAACAAATCTCGATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCAGATTTGTCTCATGTTATGGGAAAGAGTAGGGATGAACTATTTGCCATGGTTAAAAGACATGAAGCCAAAAAAGATTTTTCTCTAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTATTAAGTTATGAAGAAACAAAGGAGGCAGAAATTAATAATCTAGAAATCTCCAGATTAACCTCAGCATGTGGAAAATCTTGCTCAAGTACCGTTAAGAAGACTTCCAACTTGAGCCAAAGTAAAGAAGTCAAGGTTGAAGGTATGTTTTCTGATGCTGTAACAAACCATTTGGCTCCGGAAATAGAATATGGGACAGATTTTTCTCTAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTATTAAGTTATGAAGAAACAAAGGAGGCAGAAATTAATAATCTAGAAATCTCCAGATTAACCTCAGCATGTGGAAAATCTTGCTCAAGTACCGTTAAGAAGACTTCCAACTTGAGCCAAAGTAAAGAAGTCAAGGTTGAAGGAGAGTCTCAAGCAGATCGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGGGAAGACAAGCCTTCTATCACAGAGTTGAGTGGATACAGTTTTAAAAGAGAGGAATTTGATGTTGAATACGACAATGATGCTGAGCTAGTGTTGGCTGATATGGAATTTAAGAACACTGATACTGAAGCTGAACATCAAATGAAACTACATGTGCTTCATATCTATTCTAAAAGGTTAGATGAGCGGAAGCGAAGAAAGCATTTTGTACTTGAAAGGGAGTTGCTTTATCTTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCATTACAAGGTCTTCATGCGGTTTCATTCAAAAGAACAACATCAGGATTTTCTAAAAAATATCATTGAAGAACATAGACTGGTCAAAAGAATACAGGATTTACAGGAAGCTCGAATTGCGGGCTGTGTAACTGCTGGTGATGCTTATCGCTTTATCGAGCAAAAGAGGACAAAGGAAGCTGAATCAAGTTCCTGTAAAGAAAGTGGTCAGATTGGAACCAGTGCTAAGACATTAGAGAGGCCAAATAGTCTCAAAGGAGAACTTGACAGTAGCCCACGGGGTCTTCAAAAGGGGACTGCAGCACTATTTGCTGATTCCAAGGATTCATCTACCGCCATACAAGCCATCACAAAGTCCCTAGAAGAGTGGGATATTAGTGGATTTGCAGGGGCTGAATTTCTATCTGAATCGGAAATAAAGCTTTGTAATGAGATCAGAATACTTCCGTCACACTATCTGAACATGCAGCAGACCATGTCCTTAGAAATTTCGAAGGGAAGTGTGACCAAGAAATCTGACGCACATAAACTCTTTAAGGTAGAGCAAAGCAAGGTTGATAAAGTCTATGATATGCTTGTGAAAAAAGGAGTTCTGCAAACATAA 1935 0.3995 MGRCRAASATGPADDDPNHRLKRKRAASENSETLATVQGIANSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSIGAEVTPHKSNHPYRVMDNLCFPLICPDWNADEEILLLEAIEMYGFGNWNEVAEYVGTKNKSRCIDHYNAVYMNSPCFPLPDLSHVMGKSRDELFAMVKRHEAKKDFSLTAELMLKEEAPFSDVLSYEETKEAEINNLEISRLTSACGKSCSSTVKKTSNLSQSKEVKVEGMFSDAVTNHLAPEIEYGTDFSLTAELMLKEEAPFSDVLSYEETKEAEINNLEISRLTSACGKSCSSTVKKTSNLSQSKEVKVEGESQADRSIGEKKPKLSGEDKPSITELSGYSFKREEFDVEYDNDAELVLADMEFKNTDTEAEHQMKLHVLHIYSKRLDERKRRKHFVLERELLYLDPFEKSLLPEELQICQHYKVFMRFHSKEQHQDFLKNIIEEHRLVKRIQDLQEARIAGCVTAGDAYRFIEQKRTKEAESSSCKESGQIGTSAKTLERPNSLKGELDSSPRGLQKGTAALFADSKDSSTAIQAITKSLEEWDISGFAGAEFLSESEIKLCNEIRILPSHYLNMQQTMSLEISKGSVTKKSDAHKLFKVEQSKVDKVYDMLVKKGVLQT 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1201g00015 644 MobiDBLite consensus disorder prediction 325 355 - -
Vium1201g00015 644 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Vium1201g00015 644 MobiDBLite consensus disorder prediction 1 20 - -
Vium1201g00015 644 Gene3D - 558 644 IPR036388 -
Vium1201g00015 644 MobiDBLite consensus disorder prediction 508 524 - -
Vium1201g00015 644 FunFam Transcriptional adapter 41 96 - -
Vium1201g00015 644 Gene3D - 102 153 - -
Vium1201g00015 644 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Vium1201g00015 644 MobiDBLite consensus disorder prediction 332 353 - -
Vium1201g00015 644 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Vium1201g00015 644 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Vium1201g00015 644 MobiDBLite consensus disorder prediction 506 537 - -
Vium1201g00015 644 CDD ZZ_ADA2 48 96 IPR041983 -
Vium1201g00015 644 SMART zz_5 44 89 IPR000433 GO:0008270
Vium1201g00015 644 FunFam Transcriptional adapter 2 559 643 - -
Vium1201g00015 644 FunFam Transcriptional adapter 2 101 153 - -
Vium1201g00015 644 SUPERFAMILY RING/U-box 48 111 - -
Vium1201g00015 644 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Vium1201g00015 644 SMART sant 104 153 IPR001005 -
Vium1201g00015 644 Gene3D - 41 96 IPR043145 -
Vium1201g00015 644 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 639 - -
Vium1201g00015 644 ProSiteProfiles SWIRM domain profile. 558 644 IPR007526 GO:0005515
Vium1201g00015 644 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Vium1201g00015 644 Pfam Zinc finger, ZZ type 48 88 IPR000433 GO:0008270
Vium1201g00015 644 SUPERFAMILY Homeodomain-like 558 643 IPR009057 -
Vium1201g00015 644 SUPERFAMILY Homeodomain-like 103 154 IPR009057 -
Vium1201g00015 644 CDD SANT 108 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1201g00015 Vium-Chr1201 127944 165638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1201g00015 268 641 EF-hand Containing Proteins AT3G07740 50.266 7.75e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1201g00015 Myb_DNA-binding 2.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1201g00015 K11314 - cave:132177202 726.857