Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12018g00001 TATGTTGCATTTGTCACACGTGGATTTGCCAATAGAATAAAAAATATCATACGACCATTTTGGGACTATCGTGATGGAGAAATCCTAGGTCAAGATATTCTACCAATATTCATAGTAGTTAGGTATGAGTACAAAGAAGTGAAGAAAATGACTAAAGGTTTCAAAGTGAAATTAGGTGAGGGAGGTTTTGGTTATGTGTACAAAGGAAAGCTTCAAAGTGGGTTAGATGTTGCAGTAAAGATGTTGAGCAAATCCAAAGATAGTGGACAAGACTTTGTTAATGAAGTATCTACCATTGGAAGAATACATCATGTGAATGTAGTTCGGCTTATTGGATATTGTGTTGAAGGAAAAAAACGTTGTCTAATTTATGAATACATGCTTAATGGATCCTTGGATAAATACATTTACTTTAAAGAAGGAAGTGTTCCTTTGAGACATGAGAAGATATATGAAATATCTATTGGAATTGCTCATGGGATAGCGTATCTTCATCGAGATTGTGATGTGCAGATTTTACATTTCGATATCAAGCCTCATAATATTCTTTTAGATGATAATTTTATTCCAAAGGTTTCAGATTTTGGACTTGCAAGGTTGTATCCTGCAAAAAATGGATCTATTATTTTAACTGCAATAAGAGGAACATTAGGCTACATGGCTCCAGAGTTATTTTACAAAAATATAGGTGGAGTTTCTCATAAAGCTGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGACGAGTAGGAGAAAAAACTCAAATCCTCATACAGAACATTCAAGTCAACATTATTTTCCCTTTTGGATCCATGATCAACTTAAAGAAGACAAAGATATTGACATGGAAG 853 0.3353 YVAFVTRGFANRIKNIIRPFWDYRDGEILGQDILPIFIVVRYEYKEVKKMTKGFKVKLGEGGFGYVYKGKLQSGLDVAVKMLSKSKDSGQDFVNEVSTIGRIHHVNVVRLIGYCVEGKKRCLIYEYMLNGSLDKYIYFKEGSVPLRHEKIYEISIGIAHGIAYLHRDCDVQILHFDIKPHNILLDDNFIPKVSDFGLARLYPAKNGSIILTAIRGTLGYMAPELFYKNIGGVSHKADVYSFGMLLMEMTSRRKNSNPHTEHSSQHYFPFWIHDQLKEDKDIDME 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12018g00001 284 SUPERFAMILY Protein kinase-like (PK-like) 36 266 IPR011009 -
Vium12018g00001 284 FunFam serine/threonine-protein kinase PBS1-like 31 126 - -
Vium12018g00001 284 Gene3D Phosphorylase Kinase; domain 1 34 126 - -
Vium12018g00001 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Vium12018g00001 284 SMART serkin_6 52 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12018g00001 284 Pfam Protein kinase domain 56 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12018g00001 284 ProSiteProfiles Protein kinase domain profile. 52 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12018g00001 284 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Vium12018g00001 284 PANTHER RUST RESISTANCE KINASE LR10-RELATED 41 280 IPR045874 GO:0004672
Vium12018g00001 284 Gene3D Transferase(Phosphotransferase) domain 1 127 283 - -
Vium12018g00001 284 FunFam Os07g0541700 protein 127 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12018g00001 Vium-Chr12018 8 1094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12018g00001 16 283 Receptor kinase-like Gene Family AT4G18250 44.485 2.32e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium12018g00001 Pkinase 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12018g00001 - - vum:124821053 585.104