Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11993g00001 ATGGCGAGCTTACTAAGCTCATCACCCATAGAAGCAATCATGGACGACCCTGATTTCCTCGACTTCTCCAAACCCAGCATCACCACCAGCTCTTCCTCCGAGGAAGACTGGATCAACCTTTGGTCCCCTCTCGTCGACTGGGGATCCCTCGCCGCCGGCGAAGACAATTTTCAAACCCTCATTGACTCCATCGCCCATGAAGACGACGTCGTTTCGACCCCTGATCAAACCATAGCCCAAGACTCCGACTTAAGTAGCCACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCCCCGGCACCGAGAGCCACCACCTGGCTCGAGTGATATTGGTTCGGCTCAACGAGTTGGTGTCCACCACTCACGGCACCAACATCGAAAGACTCGCGGCGCACTTTAGCAGCGCGCTGCAAAATCTGCTAGATGGCGCCGGGAGTGCGCACAGCATAACCACCGACACCCCCAATCCCACGGACACGCTCACCGCGTTCCACCTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCATTTCACCGCCAACCAGGCTATCTTAGAGGCCGTAGCCCATGAAAAACGGGTCCACATCGTCGACTTCGACGTGACCGAAGGAGCCCAATGGGCATCCCTAATGCAGTCCCTCTCTTCAAGAAGCACCGGCCCACCTGCCCCACACCTCCGCATTACCGCATTGTCCAGAGGCTCCGCCCCTGGACGGAGATCCATCGCCACCATTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCGGCATCCGTGGGGCAACCGTTTTCTTTTCACCAATGTCGGTTGGACCCTGGCGAAACGTTTCGACCTTCGTCACTGAAACTGATTCGCGGCGAGGCCTTGGTCTTTAACTGCATGCTGCACTTGCCGCACCTGAGCTTCCGAGCCTCAGGTTCCGTTGCTTCGTTTCTGAAAGGTGCGAAGGAGTTGAACCCGAGGGTTGTAATGGTGGTAGAGGAAGAGGTGGCGCGCGGTGGAGATGCCGGCTTTGTGGGCTTGTTTATGGATTCGCTGCAGCACTACTCGGCGGTGTTTGATTCTCTGGAGGTTGGGTTTCCCATGCAGAAATGGTCCCAGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCAAGAATAGCAAATTCTGTGAGCCTTATGTACCGGAGTGGAGGAGAGGACAGAGGATCGTGGGAGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCCGTAAGCTTCGCTAATCACTGCCAAGCGAATCTGTTATTAGGACTGTTTAACGATGGATATAGAGTAGAGGAGATGGGGAACAATAAATTGGTGTTGGGTTGGAAATCACGCCGTTTGATATCAGCCTCTGTTTGGACTTCAAACTCTTGA 1407 0.5615 MASLLSSSPIEAIMDDPDFLDFSKPSITTSSSSEEDWINLWSPLVDWGSLAAGEDNFQTLIDSIAHEDDVVSTPDQTIAQDSDLSSHDEKGLRLVHLLMAAAEALTPGTESHHLARVILVRLNELVSTTHGTNIERLAAHFSSALQNLLDGAGSAHSITTDTPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPAPHLRITALSRGSAPGRRSIATIQETGRRLTAFAASVGQPFSFHQCRLDPGETFRPSSLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVMVVEEEVARGGDAGFVGLFMDSLQHYSAVFDSLEVGFPMQKWSQALVERVFLGPRIANSVSLMYRSGGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEEMGNNKLVLGWKSRRLISASVWTSNS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11993g00001 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 81 461 IPR005202 -
Vium11993g00001 468 Pfam GRAS domain family 94 465 IPR005202 -
Vium11993g00001 468 ProSiteProfiles GRAS family profile. 85 465 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11993g00001 Vium-Chr11993 1522 3096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11993g00001 84 464 GRAS Transcription Factor Family AT3G03450 33.929 1.79e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium11993g00001 GRAS 3.6e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11993g00001 - - pvu:PHAVU_008G165200g 845.499