Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11976g00002 ATGGTCAGAGCAAGAGACGATCTATGCATCAACGTTCCCACTTTCTTCACGTGCCCTATTTCTCTTGATCTCATGAAATCCCCTGTCAGTCTCTGCACCGGAATCACCTACGATCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCAAAACCAAAGACTTCGTTCCCAACCGAACTCTGCAAAGCCTCATCCAGATCTGGTCCGATTCCCTTCGCCATTCAACTATCCTCTCCCCGGACCAGGTCCTCCTGACCGTCTCTCAATTGGAAACCCCCTCTCTCCGCTCTGCTTCGCTCACCAAACTGCTCCTCTTCGCCACAGATTCTCACCATAACAAACTCTTCCTTTCCAAACTAGAACGCTTGGTCAACCAACTCGTTCGTTTCCTCCACAATGTCGACGGAGGACTCATCGCCAGAGCTAACATTCAATTTCTCGAACAAGTCGTCCTTCTGTTAGCTCTGATTCTCGATGGCGTCGAAGATCGCGATGGATTGAGAAACTCTTTGCTCAAAGGAAACAAACAGAGCCTAGATTCTCTTCTTCTCGTTCTGAAACGAGGAGGCTGCGATTCGAGATTCGCCTCCGCCAGGGTTCTGCAGTTCATCGCCGCGGACGCCGAGTCGAAGATTTTAGTAGCCGAGAAGGAAGGCGTGGTTGCGGAATTGCTGAAGTCGGCGGCGCCGGAGAACGATCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGATCGCGATTTCGGCGCCGAAGCGGAACAAACTGAAGCTGGTGAGTCTCGGCTCGGTGAGGGCGCTGTCGAGGCTGTTGGTGGAGGCGGAGCTGGGAGCGGCGACGGTGGAGAAGGTACTGAAGCTGGTGGAGGCGGTTTCTTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCGGTGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAAGTGTCTACCGTGGCGACGGAGCATGCTGTGACGACGCTGTGGAGCTTGTGCTACCTGTTTCGCGATCGCAAGGCACTGGAGGCAGTGACGCAGGCCAATGGTTTGACCAAGATTCTGTTGCTGATGCAGAGCAACTGTACGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCACGTGCTACGACACCAAGACCACGCATATCATGCCGTTTTGA 1227 0.555 MVRARDDLCINVPTFFTCPISLDLMKSPVSLCTGITYDRSSIQRWLDAGNNTCPATMQLLKTKDFVPNRTLQSLIQIWSDSLRHSTILSPDQVLLTVSQLETPSLRSASLTKLLLFATDSHHNKLFLSKLERLVNQLVRFLHNVDGGLIARANIQFLEQVVLLLALILDGVEDRDGLRNSLLKGNKQSLDSLLLVLKRGGCDSRFASARVLQFIAADAESKILVAEKEGVVAELLKSAAPENDPALVEAALASLIAISAPKRNKLKLVSLGSVRALSRLLVEAELGAATVEKVLKLVEAVSSTREGRKEICEDAVCVAAVLSKVLKVSTVATEHAVTTLWSLCYLFRDRKALEAVTQANGLTKILLLMQSNCTPQVRQMCTDLLKIFRVNSKSCLTCYDTKTTHIMPF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11976g00002 408 PANTHER WDSAM1 PROTEIN 11 395 IPR045185 GO:0061630
Vium11976g00002 408 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Vium11976g00002 408 SUPERFAMILY ARM repeat 181 395 IPR016024 -
Vium11976g00002 408 Gene3D - 185 401 IPR011989 -
Vium11976g00002 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Vium11976g00002 408 SUPERFAMILY RING/U-box 6 80 - -
Vium11976g00002 408 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Vium11976g00002 408 CDD RING-Ubox_PUB 13 65 IPR045210 -
Vium11976g00002 408 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Vium11976g00002 408 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11976g00002 Vium-Chr11976 5979 7449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11976g00002 5 408 U-box Gene Family AT5G64660 49.642 6.53e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11976g00002 - - gmx:100801033 597.43