Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11976g00001 ATGGTCAGAGCAAGAGACGATCTATGCATCAACGTTCCCACTTTCTTCACGTGCCCTATTTCTCTTGATCTCATGAAATCCCCTGTCAGTCTCTGCACCGGAATCACCTACGATCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCAAAACCAAAGACTTCGTTCCCAACCGAACTCTGCAAAGCCTCATCCAGATCTGGTCCGATTCCCTTCGCCATTCAACTATCCTCTCCCCGGACCAGGTCCTCCTGACCGTCTCTCAATTGGAAACCCCCTCTCTCCGCTCTGCTTCGCTCACCAAACTGCTCCTCTTCGCCACAGATTCTCACCATAACAAACTCTTCCTTTCCAAACTAGAACGCTTGGTCAACCAACTCGTTCGTTTCCTCCACAATGTCGACGGAGGACTCATCGCCAGAGCTAACATTCAATTTCTCGAACAAGTCGTCCTTCTGTTAGCTCTGATTCTCGATGGCGTCGAAGATCGCGATGGATTGAGAAACTCTTTGCTCAAAGGAAACAAACAGAGCCTAGATTCTCTTCTTCTCGTTCTGAAACGAGGAGGCTGCGATTCGAGATTCGCCTCCGCCAGGGTTCTGCAGTTCATCGCCGCGGACGCCGAGTCGAAGATTTTAGTAGCCGAGAAGGAAGGCGTGGTTGCGGAATTGCTGAAGTCGGCGGCGCCGGAGAACGATCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGATCGCGATTTCGGCGCCGAAGCGGAACAAACTGAAGCTGGTGAGTCTCGGCACGGTGAGGGCGCTGTCGAGGCTGTTGGAGGAGGCGGAGCTGGGAGCGGCGACGGTGGAGAAGGTACTGAAGCTGGTGGAGGCGGTTTCTTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCGGTGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAAGTGTCTACCGTGGCGACGGAGCATGCTGTGACGACGCTGTGGAGCTTGTGCTACCTGTTTCGCGATCGCAAGGCACTGGAGGCAGTGACGCAGGCCAATGGTTTGACCAAGATTCTGTTGCTGATGCAGAGCAACTGTACGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCACGTGCTACGACACCAAGACCACGCATATCATGCCGTTTTGA 1227 0.555 MVRARDDLCINVPTFFTCPISLDLMKSPVSLCTGITYDRSSIQRWLDAGNNTCPATMQLLKTKDFVPNRTLQSLIQIWSDSLRHSTILSPDQVLLTVSQLETPSLRSASLTKLLLFATDSHHNKLFLSKLERLVNQLVRFLHNVDGGLIARANIQFLEQVVLLLALILDGVEDRDGLRNSLLKGNKQSLDSLLLVLKRGGCDSRFASARVLQFIAADAESKILVAEKEGVVAELLKSAAPENDPALVEAALASLIAISAPKRNKLKLVSLGTVRALSRLLEEAELGAATVEKVLKLVEAVSSTREGRKEICEDAVCVAAVLSKVLKVSTVATEHAVTTLWSLCYLFRDRKALEAVTQANGLTKILLLMQSNCTPQVRQMCTDLLKIFRVNSKSCLTCYDTKTTHIMPF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11976g00001 408 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Vium11976g00001 408 PANTHER WDSAM1 PROTEIN 11 395 IPR045185 GO:0061630
Vium11976g00001 408 SUPERFAMILY ARM repeat 188 393 IPR016024 -
Vium11976g00001 408 Gene3D - 182 289 IPR011989 -
Vium11976g00001 408 Gene3D - 290 388 IPR011989 -
Vium11976g00001 408 SUPERFAMILY RING/U-box 6 80 - -
Vium11976g00001 408 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Vium11976g00001 408 CDD RING-Ubox_PUB 13 65 IPR045210 -
Vium11976g00001 408 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Vium11976g00001 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 84 IPR013083 -
Vium11976g00001 408 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11976g00001 Vium-Chr11976 1216 2724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11976g00001 5 408 U-box Gene Family AT5G64660 49.282 6.89e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11976g00001 - - gmx:100801033 586.26