Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11960g00003 ATGTTCCCTTCTTCTAATTACACCTCCTCGGGCTCTTACCCTCGTTTCCCTTCTTCGTCTTCTTCTGCTTCGCCCTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCTGCCAGCACCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCGACTAATTATCATGCTCCGATTCCTGAAACACTGGCCAATTGGGCAGTTGCAGATTGTGCCGCTGCGGCAATGCTCAATCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAGAAACCTGCGAAGAAAACGGCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGCTTGAGGGACCGGAGGGTGAGGCTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCTAAGAAGGCGATTAAGGAGCTAACTCGAAGCAAGCACAGTGCTGATAGCTTCGAATTCTCCTCGTCTTCGGATGGTGAAGTGGTTTCTGTCATCCACCAAGACCAACGACAGCAACAAGGGATGGACTTTGAAGAGGGGAAGTTGAAAGAAGCTGCCTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGAGAAAGGACTAGTTGCAAGATACTGTGCAGTGGTGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGGGCCCTGCAACTGAAAACCATCAAATCCTGAACCAATTAAGGTCACCCCTTCAACTTCATCCTCAAGATGTAGATGGAGGAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTGAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATGGTGCCAATGGACGCTCCACCTTTTGTGCGATAGCCAGCATGAATCTATCTGCAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1101 0.4678 MFPSSNYTSSGSYPRFPSSSSSASPYPSFTFLHPENSSASTTFLHDPLSVTFIPTNYHAPIPETLANWAVADCAAAAMLNQDLGGALYGITKKPAKKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEFSSSSDGEVVSVIHQDQRQQQGMDFEEGKLKEAAYCVKAKMKESREKARARARERTSCKILCSGEGKVQELKKKGPATENHQILNQLRSPLQLHPQDVDGGVPRDDDFNVIEESIVIKRKLKHSLMSSIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNGANGRSTFCAIASMNLSAGLQIFGKSWEECTNPHPT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11960g00003 366 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Vium11960g00003 366 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Vium11960g00003 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 92 330 IPR005333 GO:0003700
Vium11960g00003 366 Pfam TCP family transcription factor 98 228 IPR017887 -
Vium11960g00003 366 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11960g00003 Vium-Chr11960 9532 11473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11960g00003 43 225 TCP Transcription Factor Family AT1G67260 38.916 3.19e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium11960g00003 TCP 9.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11960g00003 - - gsj:114424268 553.518