Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11960g00001 ATGTTCCCTTCTTCTAATTACACCTCCTCGGGCTCTTACCCTCGTTTCCCTTCTTCGTCTTCTTCTGCTTCGCCCTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCTGCCAGCACCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCGACTAATTATCATGCTCCGATTCCTGAAACACTGGCCAATTGGGCAGTTGCAGATTGTGCCGCTGCGGCAATGCTCAATCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAGAAACCTGCGAAGAAAACGGCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGCTTGAGGGACCGGAGGGTGAGGCTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCTAAGAAGGCGATTAAGGAGCTAACTCGAAGCAAGCACAGTGCTGATAGCTTCGAATTCTCCTCGTCTTCGGATGGTGAAGTGGTTTCTGTCATCCACCAAGACCAACGACAGCAACAAGGGATGGACTTTGAAGAGGGGAAGTTGAAAGAAGCTGCCTATTGTGTTAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGAGAAAGGACTAGTTGCAAGATACTGTGCAGTGGTGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGAGCCCTGCAACTGAAAACCATCAAATCCTGAACCAATTAAGGTCACCCCTTCAACTTCATCCTCAAGATGTAGATGGAGGAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTGAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATGATGCCAATGGACGCTCCACCTTTTGTGCGATAGCCAGCATGAATCTATCTGCAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1101 0.4659 MFPSSNYTSSGSYPRFPSSSSSASPYPSFTFLHPENSSASTTFLHDPLSVTFIPTNYHAPIPETLANWAVADCAAAAMLNQDLGGALYGITKKPAKKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEFSSSSDGEVVSVIHQDQRQQQGMDFEEGKLKEAAYCVKAKMKESREKARARARERTSCKILCSGEGKVQELKKKSPATENHQILNQLRSPLQLHPQDVDGGVPRDDDFNVIEESIVIKRKLKHSLMSSIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNDANGRSTFCAIASMNLSAGLQIFGKSWEECTNPHPT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11960g00001 366 ProSiteProfiles R domain profile. 211 228 IPR017888 -
Vium11960g00001 366 ProSiteProfiles TCP domain profile. 100 158 IPR017887 -
Vium11960g00001 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 92 332 IPR005333 GO:0003700
Vium11960g00001 366 MobiDBLite consensus disorder prediction 1 20 - -
Vium11960g00001 366 Pfam TCP family transcription factor 98 228 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11960g00001 Vium-Chr11960 23 1428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11960g00001 43 225 TCP Transcription Factor Family AT1G67260 38.916 2.66e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium11960g00001 TCP 9.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11960g00001 - - gsj:114424268 552.362