Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11957g00001 ATGTCTTTCAGTTTCACTGACCTACTTTCTAACAGCAATAGCTTAACCCTGGATGATGATCCTTTTGGACTTGAATTTGCTAACACTTTCAAACAACTTCAACCTCTCCCTTCTTATTCTGAGTTCCCACCTGGTTTTGCTCCAACAACACAGTCATTGAACTCACCCCTCTTGTTTTCTTCTCTAAATGTTCCTGCATCTTACTCAACTGAGTCATCTTCCAGCATGAACTTCAACATGAGAAACAGTTCAACTGTGGACCAGCTAGGAAACAAGGAGGAAGAGAGAAACTACTCTGACTTCTCTTTCCTAACAAAAGCAAACCACGTGCCTCTCTTTCAATCTTCCACAAGCATGTTTCAAGTGGAGCCATTAAAGAAACAGGACACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATATGCAACAACTCAGGGCTTCTCCACAGAAGTTGTCTCAATCAAACCTGAAATACAAAGCAATTCTACTTCTGGGTCTGTTCAATTTAACTCCAACAATGCTTTTAAGTCCATTAGAAAACAAGGAAAATCAGAAGATGGGTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGTGAGAATCCACGCAGTTATTACAAGTGCACTTATCCAAATTGTCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACCGAAATAGTATACAGGGGAAGTCACAATCATCCTAAGCCACATAATAGAAAAAATGGCTCTCAATCAATGCATCAAACTTCTTCATCCTGTACCATCTCTGGGATTTCAGATCAGTCTATGGGAGAGGAAGACTTTGAGCAAACATCACAAACTAGTTGCTCTGGAGGTGTTGATGATGATGACTTTGGTCATGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTCTAATTCCTCAGCTGGGAGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTAGATGATGGATATAGGTCGAGGAAATATGGACGGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTTGCCCCAGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTGCAAATGACATGAAAGCTGTGCTAACAACCTATGAAGGGAAACATAACCATGATGTTCCTTTAGGACGAGGAAATGCAAGCTATTATAGAGCTTCTCTAAACAACAACACCAGCAATGTAACAGCACCTGCCCCAATAAGGCCTTCAGCAGTGAATAATTATTCTAACTCAGTAAATTTCATCAATTCACTCCCAGACACAAAGCTCTCAGCATCTGCAAATCAAGAAGCTGTTCCGATGGACATGTTGCTGAGCCCTGGAAGCCTAGGATTTTCGTCTAATGACTCATTCCTTCAGTCTTTTTTTTCAAAGAACTTCTAA 1479 0.4043 MSFSFTDLLSNSNSLTLDDDPFGLEFANTFKQLQPLPSYSEFPPGFAPTTQSLNSPLLFSSLNVPASYSTESSSSMNFNMRNSSTVDQLGNKEEERNYSDFSFLTKANHVPLFQSSTSMFQVEPLKKQDTMIFNEAAKQTDFSSERTETKSEYATTQGFSTEVVSIKPEIQSNSTSGSVQFNSNNAFKSIRKQGKSEDGYNWRKYGEKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNGSQSMHQTSSSCTISGISDQSMGEEDFEQTSQTSCSGGVDDDDFGHEAKRWKGENENDDYSNSSAGSRTVKEPRVVVQTTSEIDILDDGYRSRKYGRKVVKGNPNPRSYYKCVAPGCPVRKHVERAANDMKAVLTTYEGKHNHDVPLGRGNASYYRASLNNNTSNVTAPAPIRPSAVNNYSNSVNFINSLPDTKLSASANQEAVPMDMLLSPGSLGFSSNDSFLQSFFSKNF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11957g00001 492 ProSiteProfiles WRKY domain profile. 341 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 MobiDBLite consensus disorder prediction 300 317 - -
Vium11957g00001 492 SUPERFAMILY WRKY DNA-binding domain 338 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 FunFam WRKY transcription factor 329 407 - -
Vium11957g00001 492 Pfam WRKY DNA -binding domain 197 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 Pfam WRKY DNA -binding domain 347 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 MobiDBLite consensus disorder prediction 318 333 - -
Vium11957g00001 492 MobiDBLite consensus disorder prediction 260 298 - -
Vium11957g00001 492 FunFam WRKY transcription factor 183 256 - -
Vium11957g00001 492 SMART WRKY_cls 346 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 SMART WRKY_cls 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 SUPERFAMILY WRKY DNA-binding domain 192 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 MobiDBLite consensus disorder prediction 245 333 - -
Vium11957g00001 492 ProSiteProfiles WRKY domain profile. 197 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 117 427 IPR044810 GO:0003700
Vium11957g00001 492 Gene3D WRKY domain 181 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium11957g00001 492 Gene3D WRKY domain 331 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11957g00001 Vium-Chr11957 17232 20444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11957g00001 191 442 WRKY Transcription Factor Family AT2G38470 56.491 2.63e-100 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium11957g00001 WRKY 7.1e-21 CL0274