Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11951g00002 ATGAAACTTCTGCACCCAGAGGTTTCCTTCTACAACCTTCACTTCATTCACGAAATGAATCACGGAATTGAAACCCTTTCGCTGATTTTGTGTCTCGATGTCTTAAATGCAGAGGGCAAGCCCGTTATGGTGATCCTGGTAGGAGCACCCGGGAGTGGTAAATCCACCTTCGGCGAAGATGTAATGCGTTCATCTACTCGCCACTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGCAAAGCAGGAACTAAAGCTCAGTGCCTAAGCAGTGCAACTAGTGCATTGAAGGATGGAAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGGTCAGAATTCATAAAACTTGGTGGTGGACTCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCGAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAGAGCGGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAACCGGATAACATTTTGTCAGAATGAGAATGATGTAAAAAATGCGATTAATTTATACAGCTCACTTGGGCCACTGGATAATCTTCCACATGGCTGCTTTGGCCAGAAGAATACAGATTCGAAAATTCAAGTTGGCATAATGAAGTTCCTAAAAAGAGCAGAGGTCCCACTTGCTGCTGCATCTACAACGAGTGGCACTGAAGAGCCTACTTCCCAGACTCCGAGAAATAATTCGTACTGCAAAGATAAGGAAGCGCTTTCCTCAATTTCAGATACTGACAACTTAGAGACAAAGGAAGTAGAAAGGCAAGAAGTTGGTTCTGCTGGTTCTGCTGGTTCGCATGCCAATCCAGTTTGTCCGGATGATATTCCAACTCTGGCATTTCCCTCTATTTCAACATCTGATTTCCAATTCAATCTTGAGAAGGCAGCTGATATTATCGTTGAGAAGGTTGCAGAGTTCTTAAATAAGTTTAGGAATGCCAGAATTGTTCTTGTTGACTTATCTCATAAGTCAAAGATTTTATCCTTAGTTAAAGCCAGAATTGCAGAAAAAAACATGGACACCCAAAAGTTTTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGCAATGCCATTGCTAATGCTGCCAACTGGAGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCAGAACTGGAGTCTGCAACAAAAGATAAAGTAAAATCTCTTTCACCTGGGAATGCTGCTGTTGTCCCTCTGCCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTAAATAATGATTATAATAAAGGCTGCAAAATTCTGCAAGATGCTTATACTTCACTCTTTGATGGTTTTGCGTCTATTGTGCGGAACCACCCAGGGATACCAGAGGGAAAAGGTGAAAAGCTTGAAAGGAAATCATTGGAGTTGCCGGTTCAGTCTGATTGTTCTTCCAGAAAATATTTTACAGGTACTGATCAAAAGAGTAAGAGAAGTGATGATCATGGATCAGAGAAAAGCAAGAAATGCAAGGGAACTCAGGATGACTTAGGATTGCCCTTTACTGATTCTAAGGGTGAAAAGGTAGATTCAGAGCATAGAAGAATAGAGAGGAGCAGGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCAACAAATAGCTATGCATCCTGAAAAGCATAAGGGTGATTTGCTTGAAATTTCCGATGATGTTGTTGTATTGAATGATATCTATCCAAAGGCGCAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGACTGCCTCGCTGATGTCCAAAAGGAGCACCTTCAGTTATTGAACATGATGCACGATGTGGGTTTAAAGTGGGTTGAGAAGTTCTTAAGCGAGAATGCTTCTCTGGTATTTCGACTTGGGTATCACTCGGCACCATCGATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAACACAATTAAAGAATAAGAAGCACTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTTGATGTAATGGATGAGGTCTCTAGTGATGGGAAGGCAACGTTGAAAGATGATGACAAGCTACTCTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCCCATCCAAACATACCCCGGTTAAAATCTCATATAAGCAGCTGCCAATCCCCATTTCCTGCATACCTACTTCAGAAAGGACGTTTAGTGCATGCTCCGGGGGAACCTCGCAACAGTGTACAGTAG 2376 0.4272 MKLLHPEVSFYNLHFIHEMNHGIETLSLILCLDVLNAEGKPVMVILVGAPGSGKSTFGEDVMRSSTRHWVRVCQDTIGNGKAGTKAQCLSSATSALKDGKSVFIDRCNLDREQRSEFIKLGGGLQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGRAAAVVNRMLQHKELPKLSEGFNRITFCQNENDVKNAINLYSSLGPLDNLPHGCFGQKNTDSKIQVGIMKFLKRAEVPLAAASTTSGTEEPTSQTPRNNSYCKDKEALSSISDTDNLETKEVERQEVGSAGSAGSHANPVCPDDIPTLAFPSISTSDFQFNLEKAADIIVEKVAEFLNKFRNARIVLVDLSHKSKILSLVKARIAEKNMDTQKFFTHVGDITHLYSRGGLRCNAIANAANWRLKPGGGGVNAAIFNAAGPELESATKDKVKSLSPGNAAVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILQDAYTSLFDGFASIVRNHPGIPEGKGEKLERKSLELPVQSDCSSRKYFTGTDQKSKRSDDHGSEKSKKCKGTQDDLGLPFTDSKGEKVDSEHRRIERSRSKAWGSWAQALQQIAMHPEKHKGDLLEISDDVVVLNDIYPKAQKHVLVLARTGGLDCLADVQKEHLQLLNMMHDVGLKWVEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESTQLKNKKHWNSFNTAFFRDSVDVMDEVSSDGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSPFPAYLLQKGRLVHAPGEPRNSVQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11951g00002 791 MobiDBLite consensus disorder prediction 238 296 - -
Vium11951g00002 791 SUPERFAMILY Macro domain-like 351 490 IPR043472 -
Vium11951g00002 791 FunFam Transcription factor bHLH140 351 498 - -
Vium11951g00002 791 SUPERFAMILY Macro domain-like 301 347 IPR043472 -
Vium11951g00002 791 FunFam Transcription factor bHLH140 33 200 - -
Vium11951g00002 791 Pfam C2HE / C2H2 / C2HC zinc-binding finger 710 763 IPR032566 -
Vium11951g00002 791 MobiDBLite consensus disorder prediction 532 554 - -
Vium11951g00002 791 FunFam aprataxin isoform X2 586 766 - -
Vium11951g00002 791 MobiDBLite consensus disorder prediction 265 282 - -
Vium11951g00002 791 ProSitePatterns HIT domain signature. 674 692 IPR019808 -
Vium11951g00002 791 Gene3D - 587 768 IPR036265 -
Vium11951g00002 791 Pfam Scavenger mRNA decapping enzyme C-term binding 592 705 - -
Vium11951g00002 791 MobiDBLite consensus disorder prediction 238 264 - -
Vium11951g00002 791 SMART YBR022w_8 370 512 IPR002589 -
Vium11951g00002 791 Pfam AAA domain 43 168 - -
Vium11951g00002 791 MobiDBLite consensus disorder prediction 527 576 - -
Vium11951g00002 791 MobiDBLite consensus disorder prediction 562 576 - -
Vium11951g00002 791 Gene3D Leucine Aminopeptidase, subunit E, domain 1 352 497 IPR043472 -
Vium11951g00002 791 Gene3D Leucine Aminopeptidase, subunit E, domain 1 292 351 IPR043472 -
Vium11951g00002 791 PANTHER APRATAXIN-RELATED 305 765 - -
Vium11951g00002 791 ProSiteProfiles Macro domain profile. 358 596 IPR002589 -
Vium11951g00002 791 SUPERFAMILY HIT-like 582 749 IPR036265 -
Vium11951g00002 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 187 IPR027417 -
Vium11951g00002 791 Gene3D - 33 201 IPR027417 -
Vium11951g00002 791 Pfam Macro domain 393 476 IPR002589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11951g00002 Vium-Chr11951 9151 13944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11951g00002 38 780 C2H2 Transcription Factor Family AT5G01310 59.354 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11951g00002 K10863 - gmx:100786762 1276.15