Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11951g00001 ATGGACATGATGGACGTGGATGAAACTTCTGCACCCAGAGAGGGCAAGCCCGTTATGGTGATCCTGGTAGGAGCACCCGGGAGTGGTAAATCCACCTTCGGCGAAGATGTAATGCGTTCATCTACTCGCCACTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGCAAAGCAGGAACTAAAGCTCAGTGCCTAAGCAGTGCAACTAGTGCATTGAAGGATGGAAAGAGTGTATTTATTGACAGGTGCAATCTTGACAGAGAACAGCGGTCAGAATTCATAAAACTTGGTGGTGGACTCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCGAAGCTTTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAGAGCGGCTGCAGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAACCGGATAACATTTTGTCAGAATGAGAATGATGTAAAAAATGCGATTAATTTATACAGCTCACTTGGGCCACTGGATAATCTTCCACATGGCTGCTTTGGCCAGAAGAATACAGATTCGAAAATTCAAGTTGGCATAATGAAGTTCCTAAAAAGAGCAGAGGTCCCACTTGCTGCTGCATCTACAACGAGTGGCACTGAAGAGCCTACTTCCCAGACTCCGAGAAATAATTCGTACTGCAAAGATAAGGAAGCGCTTTCCTCAATTTCAGATACTGACAACTTAGAGACAAAGGAAGTAGAAAGGCAAGAAGTTGGTTCTGCTGGTTCTGCTGGTTCGCATGCCAATCCAGTTTGTCCGGATGATATTCCAACTCTGGCATTTCCCTCTATTTCAACATCTGATTTCCAATTCAATCTTGAGAAGGCAGCTGATATTATCGTTGAGAAGGTTGCAGAGTTCTTAAATAAGTTTAGGAATGCCAGAATTGTTCTTGTTGACTTATCTCATAAGTCAAAGATTTTATCCTTAGTTAAAGCCAGAATTGCAGAAAAAAACATGGACACCCAAAAGTTTTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGCAATGCCATTGCTAATGCTGCCAACTGGAGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCAGAACTGGAGTCTGCAACAAAAGATAAAGTAAAATCTCTTTCACCTGGGAATGCTGCTGTTGTCCCTCTGCCTTCATCTTCTCCTTTGTTCACCAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTAAATAATGATTATAATAAAGGCTGCAAAATTCTGCAAGATGCTTATACTTCACTCTTTGATGGTTTTGCGTCTATTGTGCGGAACCACCCAGGGATACCAGAGGGAAAAGGTGAAAAGCTTGAAAGGAAATCATTGGAGTTGCCGGTTCAGTCTGATTGTTCTTCCAGAAAATATTTTACAGGTACTGATCAAAAGAGTAAGAGAAGTGATGATCATGGATCAGAGAAAAGCAAGAAATGCAAGGGAACTCAGGATGACTTAGGATTGCCCTTTACTGATTCTAAGGGTGAAAAGGTAGATTCAGAGCATAGAAGAATAGAGAGGAGCAGGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCAACAAATAGCTATGCATCCTGAAAAGCATAAGGGTGATTTGCTTGAAATTTCCGATGATGTTGTTGTATTGAATGATATCTATCCAAAGGCGCAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGACTGCCTCGCTGATGTCCAAAAGGAGCACCTTCAGTTATTGAACATGATGCACGATGTGGGTTTAAAGTGGGTTGAGAAGTTCTTAAGCGAGAATGCTTCTCTGGTATTTCGACTTGGGTATCACTCGGCACCATCGATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAACACAATTAAAGAATAAGAAGCACTGGAACTCATTTAACACTGCTTTCTTTCGTGACTCGGTTGATGTAATGGATGAGGTCTCTAGTGATGGGAAGGCAACGTTGAAAGATGATGACAAGCTACTCTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCCCATCCAAACATACCCCGGTTAAAATCTCATATAAGCAGCTGCCAATCCCCATTTCCTGCATACCTACTTCAGAAAGGACGTTTAGTGCATGCTCCGGGGGAACCTCGCAACAGTGTACAGTAG 2304 0.4293 MDMMDVDETSAPREGKPVMVILVGAPGSGKSTFGEDVMRSSTRHWVRVCQDTIGNGKAGTKAQCLSSATSALKDGKSVFIDRCNLDREQRSEFIKLGGGLQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGRAAAVVNRMLQHKELPKLSEGFNRITFCQNENDVKNAINLYSSLGPLDNLPHGCFGQKNTDSKIQVGIMKFLKRAEVPLAAASTTSGTEEPTSQTPRNNSYCKDKEALSSISDTDNLETKEVERQEVGSAGSAGSHANPVCPDDIPTLAFPSISTSDFQFNLEKAADIIVEKVAEFLNKFRNARIVLVDLSHKSKILSLVKARIAEKNMDTQKFFTHVGDITHLYSRGGLRCNAIANAANWRLKPGGGGVNAAIFNAAGPELESATKDKVKSLSPGNAAVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILQDAYTSLFDGFASIVRNHPGIPEGKGEKLERKSLELPVQSDCSSRKYFTGTDQKSKRSDDHGSEKSKKCKGTQDDLGLPFTDSKGEKVDSEHRRIERSRSKAWGSWAQALQQIAMHPEKHKGDLLEISDDVVVLNDIYPKAQKHVLVLARTGGLDCLADVQKEHLQLLNMMHDVGLKWVEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESTQLKNKKHWNSFNTAFFRDSVDVMDEVSSDGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSPFPAYLLQKGRLVHAPGEPRNSVQ 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11951g00001 767 MobiDBLite consensus disorder prediction 214 272 - -
Vium11951g00001 767 Gene3D Leucine Aminopeptidase, subunit E, domain 1 268 327 IPR043472 -
Vium11951g00001 767 Pfam Macro domain 369 452 IPR002589 -
Vium11951g00001 767 Pfam C2HE / C2H2 / C2HC zinc-binding finger 686 739 IPR032566 -
Vium11951g00001 767 MobiDBLite consensus disorder prediction 508 530 - -
Vium11951g00001 767 ProSiteProfiles Macro domain profile. 334 572 IPR002589 -
Vium11951g00001 767 FunFam aprataxin isoform X2 562 742 - -
Vium11951g00001 767 ProSitePatterns HIT domain signature. 650 668 IPR019808 -
Vium11951g00001 767 FunFam Transcription factor bHLH140 7 176 - -
Vium11951g00001 767 Gene3D - 3 177 IPR027417 -
Vium11951g00001 767 MobiDBLite consensus disorder prediction 241 258 - -
Vium11951g00001 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 163 IPR027417 -
Vium11951g00001 767 Gene3D Leucine Aminopeptidase, subunit E, domain 1 328 473 IPR043472 -
Vium11951g00001 767 MobiDBLite consensus disorder prediction 214 240 - -
Vium11951g00001 767 FunFam Transcription factor bHLH140 327 474 - -
Vium11951g00001 767 Gene3D - 563 744 IPR036265 -
Vium11951g00001 767 SMART YBR022w_8 346 488 IPR002589 -
Vium11951g00001 767 SUPERFAMILY HIT-like 558 725 IPR036265 -
Vium11951g00001 767 PANTHER APRATAXIN-RELATED 281 741 - -
Vium11951g00001 767 Pfam AAA domain 19 144 - -
Vium11951g00001 767 Pfam Scavenger mRNA decapping enzyme C-term binding 568 681 - -
Vium11951g00001 767 MobiDBLite consensus disorder prediction 538 552 - -
Vium11951g00001 767 MobiDBLite consensus disorder prediction 503 552 - -
Vium11951g00001 767 SUPERFAMILY Macro domain-like 277 323 IPR043472 -
Vium11951g00001 767 SUPERFAMILY Macro domain-like 327 466 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11951g00001 Vium-Chr11951 9140 13944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11951g00001 14 756 C2H2 Transcription Factor Family AT5G01310 59.354 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11951g00001 K10863 - gmx:100786762 1291.17