Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11949g00002 ATGGAACAGTTATTTTGGCAGAGAGCAGTATCAATTGTGTTCGTTTTCTTTGCTCTGAGATTTCCCAGGGCAGTAGCTACTAAACCAGCAGTTCCAGCATTGTTTTCATTCGGAGACTCAATTCTTGATACGGGAAACAATAACAATCTTCAAACGATGAGCAAGTGTAATTTTCCACCCTATGGAAGGGATTTCCCAGGTGGAGTACCTACAGGAAGATTCTGCAATGGAAGAAATCCCACAGATTTGATAGCATCTGCATTGGGAGTAAAAGAAACAGTGCCAGCATATCTTAGCACCACCTTGACTCCTCAAGACCTCATCACTGGGGTTTCCTTTGCTTCTGGTGGTTCTGGGCTTGATGATCTCACTTCTAAAGTACAGGGAGTTATAACGACACCAGCCCAACTGGCGATGTTCAAAGAATACATAGGAAAGCTGACAGCAGTTGTCGGACAACAACGTGCGAGTGAGATCCTAGCCAACAGCATTTTCCTTGTTTCTGCCGGCAACAACGACGTTGCCTTCACCTATTCTTTCCTTCTTGCCACCACACGTCCTTTCCCTCAATATGTCTCTTATTTAATTTCCCTCGCCACAAACTTCTACAAGAGTCTATATGATCTTGGAGTACGAAAAGTGTGGGTGTTAAGCACATTGCCACTGGGATGCTTACCTGGAGGTAGAACAACAGGTGGAGGGCCATTGAGATTTTGTGCAGAACTTGCGAACATGGAAGCACAGACATTCAATGGGCAGTTATCAGAAGCAGTTGATTCTCTCAAAGCCAGTCTTCCAAATTATGACATTAGATTCGTCGATGTTTATAATCCTTTTCTTAGTATTATTAATAATCCACAGGCATCAGGGTTTACAGACGCCGGTGAAGCGTGTTGTGGGACTGCTCCATTTGGAGTTTCAGGGCTGTGTAACCTTCTGGATATATGTCCAAATCCTTCCACTTTCATTTTCTGGGATTTTGCTCATCCGACCGAGAGAGCTTATCAGCTTGTGGTGAATTCTATTCTTCAGAAAATGAACATGAATGTTCCAAGCTCTTTTGCTTCTTCTCATGTTAACACTTCTATCACAAATTAA 1098 0.4308 MEQLFWQRAVSIVFVFFALRFPRAVATKPAVPALFSFGDSILDTGNNNNLQTMSKCNFPPYGRDFPGGVPTGRFCNGRNPTDLIASALGVKETVPAYLSTTLTPQDLITGVSFASGGSGLDDLTSKVQGVITTPAQLAMFKEYIGKLTAVVGQQRASEILANSIFLVSAGNNDVAFTYSFLLATTRPFPQYVSYLISLATNFYKSLYDLGVRKVWVLSTLPLGCLPGGRTTGGGPLRFCAELANMEAQTFNGQLSEAVDSLKASLPNYDIRFVDVYNPFLSIINNPQASGFTDAGEACCGTAPFGVSGLCNLLDICPNPSTFIFWDFAHPTERAYQLVVNSILQKMNMNVPSSFASSHVNTSITN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11949g00002 365 Gene3D SGNH hydrolase 20 350 IPR036514 -
Vium11949g00002 365 PANTHER GDSL ESTERASE/LIPASE EXL3 14 341 - -
Vium11949g00002 365 Pfam GDSL-like Lipase/Acylhydrolase 34 341 IPR001087 GO:0016788
Vium11949g00002 365 CDD SGNH_plant_lipase_like 32 345 IPR035669 -
Vium11949g00002 365 SUPERFAMILY SGNH hydrolase 37 346 - -
Vium11949g00002 365 FunFam GDSL esterase/lipase APG 24 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11949g00002 Vium-Chr11949 16992 18479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11949g00002 10 347 Pollen Coat Proteome AT1G75910 40.058 3.85e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11949g00002 - - gmx:100789445 503.827