Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11945g00001 AGTTTACCCAAGTTGAAAAGGCTCAACCTGAGTTTTTCTCAGAAACTTACTAGAATACCAGACCTTTCTTTGTCACCAAATATTGAAGAAATAATTCTCAATGATTGTCCAGAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCATTTTTTTACGTTTAGATAACTGTGATAATCTCAAAAGTGTAACTGTTCCCAGCAATATTCTGTCCAGATCACCAGGATGCATTCTTCTTTACTCCTGTTGCAAGCTTGAAATGTTTTCAACCACTCAAACCCAAATATGTTATTCTCCACCATCATCATCATTAATCGGTCGTCAAAATTTCTCTGGGGTGCCCTTAAATACTGGTAGCTTGAAAAGGCTCATTCCCATAAGACCCTATTCCAGTGAAATTTTCTCCATTACTTTTGACCGATATTGGGGAACAGACGACGAAAAAGAAGTGACTAATAATAATGTATACGCAGATGATGAAGTGCTGCTACAACTCACTAGATATATGTCCTTAAACACTCCAAGTCCCAAAAACCTCTGTTTCATAAATCTCTCGAAATGTTCTTCCCTTACAATATTTCTATTTGACCTTTCTGAGATGAAATTCCTAAAGAAACTTTGTCTTAGTGGTTGCTCAAAATTGGAAAACTTCCCCGAGATTGAGGACACGATGGAAAATTTAGCGGTTCTAATCTTAGACCACACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAACAACTGAGTTTGCGCAGTTGCATGANAATAGAAAGAGATCCAATAGACACTGTCAGAGAAAAATATATGTCTGAGGTTGTAAATATGTCTGAGTACAGACTCAAACGAATGAGGATTCTCATCATTCTTGATGATGTTACCGATTCAGTTCAAGTTAAAGAATTGCTAGGAAGGCATGATAGTTTTGGACAAGGTAGTAGAATCATTATAACCAGTAGAGACAAACAAGTGTTAAGGAATGCTGGAGCTGATGACATCTACGATGTTGAGGAGTTGAATAAAGATGATTCTCTAAAACTTTTTAGTTTACATGCTTTTCAACAAAACTCTTCACAAGAAATAACGTACAAGGACTTGACAAAAAAAGTGTTGAGATATGCAAAAGGAATTCCATTAGTTCTCCAAATTTTGGGCTCATTACTTTTTGGCAGAACAAGAGAAGCATGGGAAAGTCTGTTACAAAAGTTGAAAAAATTCCAGCATAGTAAAATTTTTAGTGTATTAAAATTAAGTTATGATGGGCTTGATGACGAGGAGAAGAATATATTTCTTGACATCGCTTGCTTTTATAGGGGATGCAAGGAAAGTGAGGTAGTAAAAAGATTAGATGACTGTGGTTTTTCTTCTAAGATTGGAATGGATGTTCTCAAAGACAGATGTCTAATATCTATCGTTGATGGTAGAACTAAAATGCACGATCTAATGCGAGAAATGGGTGAAGAAGTTGATGGTAGAATTGAAATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTCAAGAGTGTCCTCAATATCCTGAAAAACGCACTCGATTGTTCAATGCTGACGAAATTGATGAGGTTTTAAAAAAGAACAAGGTATGTTATATTGTCACTCAATTGAAAGAGTCACATGGATTTACTTTTCTTAAATTGCAAACCACTTACTATCTTGAACAACTTTGGGAAGGAGATCAGTTCATTTACTTTTTGTGGCAGAGTTTACCCAAGTTGAAAAGGCTCAACCTGAGTTTTTCTCAGAAACTTACTAGAATACCAGACCTTTCTTTGTCACCAAATATTGAAGAAATAATTCTCAATGATTGTCCAGAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCATTTTTTTACGTTTAGATAACTGTGATAATCTCAAAAGTGTAACTGTTCCCAGCAATATTCTGTCCAGATCACCAGGATGCATTCTTCTTTACTCCTGTTGCAAGCTTGAAATGTTTTCAACCACTCAAACCCAAATATGTTATTCTCCACCATCATCATCATTAATCGGTCGTCAAAATTTCTCTGGGGTGCCCTTAAATACTGGTAGCTTGAAAAGGCTCATTCCCATAAGACCCTATTCCAGTGAAATTTTCTCCATTACTTTTGACCGATATTGGGGAACAGACGACGAAAAAGAAGTGACTAATAATAATGTATACGCAGATGATGAAGTGCTGCTACAACTCACTAGATATATGTCCTTAAACACTCCAAGTCCCAAAAACCTCTGTTTCATAAATCTCTCGAAATGTTCTTCCCTTACAATATTTCTATTTGACCTTTCTGAGATGAAATTCCTAAAGAAACTTTGTCTTAGTGGTTGCTCAAAATTGGAAAACTTCCCCGAGATTGAGGACACGATGGAAAATTTAGCGGTTCTAATCTTAGACCACACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAACAACTGAGTTTGCGCAGTTGCATGAATCTTGAGATTATTCCATCTTCCATTGGAAGCCTCACCAGACTATGCAAGTTAGACCTTACCAAATGTGAATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTAAGGCTGAGGACCTTCCCAGAGATCATGGAGCCGACACAAACTTTTGCTCACATAAACTTAACAGAAACGGCTATCAAAGAACTGCCTTCCTCGTTTGGCAATTTGGTTAAGCTTCGATCCCTGCAGCTCAACAATTCCTCTGATCTCGAGTCACTTCCAAACTCCATTGTTAATCTAAAGCATCTCTGTAAACTTGATTGTTCCGGGTGTGCCAAATTAACAGAAATCCCAACTCACATTGGTTGCTTGTCTTCATTAATGGAAATGTCACTGAGTGAGAGCGGAATAGTGAACCTTCCTGAAAGCATTGCTCATCTTTCAAGCTTGAAATCGCTTGATTTAAGTTACTGCAAAAAGCTTGAATGCATCCCACAGATTCCACCATGTCTAAAACAACTCGTGGCATTGGATTGCCCATCCATTAAAAGAGTGATGCTAAATTCTCTTGTTCGAAACCTCTCAGAGTCGAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGAATGACCGACGATGCATATAGGTCTGTGTTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCCTTTCGCAGTGAAGGAAGTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTCATTGGTTTCGCTTTGTGTGTGGTTTTTGAATTGTTAGATACCAATCAAATTATTGGTAGACGTGATTCTTTTCGTTACTGCCTAAAATTTGAATGTGATGATGATGGTACACAGATTATTCTAAAAGAGGATCTGTTACATAACTATTTCGAATGGAATGGTAAAGAAAGAGTTGTCAATCAAGATCACACATTTATGTGGAAATTTAACTTGGAGAGCCTAAGGAGGAGCGGCATGAACCTTAGGCTCTCTGATGCTCGAAGCTTCACTTTTGAGATCACTCCATATTATGTCTACTTTGTGGGGTCAAATTTCTACTCCGTTGCGAACGAGTTAAAATCAGTTGTGACAATAAAAGAATGCGGCTTATGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAAGGGAAACAACGGAACATAGGAAGAGGAAGGCCGAAAGCCACTTAGTAGGCTAG 3825 0.3827 SLPKLKRLNLSFSQKLTRIPDLSLSPNIEEIILNDCPELIKVHSSILLTKLIFLRLDNCDNLKSVTVPSNILSRSPGCILLYSCCKLEMFSTTQTQICYSPPSSSLIGRQNFSGVPLNTGSLKRLIPIRPYSSEIFSITFDRYWGTDDEKEVTNNNVYADDEVLLQLTRYMSLNTPSPKNLCFINLSKCSSLTIFLFDLSEMKFLKKLCLSGCSKLENFPEIEDTMENLAVLILDHTAIQALPSSLWRLVGLQQLSLRSCMXIERDPIDTVREKYMSEVVNMSEYRLKRMRILIILDDVTDSVQVKELLGRHDSFGQGSRIIITSRDKQVLRNAGADDIYDVEELNKDDSLKLFSLHAFQQNSSQEITYKDLTKKVLRYAKGIPLVLQILGSLLFGRTREAWESLLQKLKKFQHSKIFSVLKLSYDGLDDEEKNIFLDIACFYRGCKESEVVKRLDDCGFSSKIGMDVLKDRCLISIVDGRTKMHDLMREMGEEVDGRIEMHDLIQEMGQEIVRQECPQYPEKRTRLFNADEIDEVLKKNKVCYIVTQLKESHGFTFLKLQTTYYLEQLWEGDQFIYFLWQSLPKLKRLNLSFSQKLTRIPDLSLSPNIEEIILNDCPELIKVHSSILLTKLIFLRLDNCDNLKSVTVPSNILSRSPGCILLYSCCKLEMFSTTQTQICYSPPSSSLIGRQNFSGVPLNTGSLKRLIPIRPYSSEIFSITFDRYWGTDDEKEVTNNNVYADDEVLLQLTRYMSLNTPSPKNLCFINLSKCSSLTIFLFDLSEMKFLKKLCLSGCSKLENFPEIEDTMENLAVLILDHTAIQALPSSLWRLVGLQQLSLRSCMNLEIIPSSIGSLTRLCKLDLTKCESLQTFPSTIFKLKLRKLDLCGCLRLRTFPEIMEPTQTFAHINLTETAIKELPSSFGNLVKLRSLQLNNSSDLESLPNSIVNLKHLCKLDCSGCAKLTEIPTHIGCLSSLMEMSLSESGIVNLPESIAHLSSLKSLDLSYCKKLECIPQIPPCLKQLVALDCPSIKRVMLNSLVRNLSESKEGVFKFHFTNAQQLDSGARANIEEDARLRMTDDAYRSVFFCFPGTAVPHWFPFRSEGSSVSINEDLSFCSDDRLIGFALCVVFELLDTNQIIGRRDSFRYCLKFECDDDGTQIILKEDLLHNYFEWNGKERVVNQDHTFMWKFNLESLRRSGMNLRLSDARSFTFEITPYYVYFVGSNFYSVANELKSVVTIKECGLCPLYRSGSNVGESSRETTEHRKRKAESHLVG 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11945g00001 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 439 IPR027417 -
Vium11945g00001 1274 Gene3D Ribonuclease Inhibitor 903 1062 IPR032675 -
Vium11945g00001 1274 Gene3D Ribonuclease Inhibitor 537 678 IPR032675 -
Vium11945g00001 1274 Gene3D Ribonuclease Inhibitor 1 97 IPR032675 -
Vium11945g00001 1274 Gene3D Ribonuclease Inhibitor 745 902 IPR032675 -
Vium11945g00001 1274 Gene3D Ribonuclease Inhibitor 162 289 IPR032675 -
Vium11945g00001 1274 SMART LRR_typ_2 226 249 IPR003591 -
Vium11945g00001 1274 SMART LRR_typ_2 807 830 IPR003591 -
Vium11945g00001 1274 SMART LRR_typ_2 583 607 IPR003591 -
Vium11945g00001 1274 SMART LRR_typ_2 972 995 IPR003591 -
Vium11945g00001 1274 SMART LRR_typ_2 2 26 IPR003591 -
Vium11945g00001 1274 MobiDBLite consensus disorder prediction 1257 1274 - -
Vium11945g00001 1274 Pfam NB-ARC domain 286 425 IPR002182 GO:0043531
Vium11945g00001 1274 PRINTS Disease resistance protein signature 286 300 - -
Vium11945g00001 1274 PRINTS Disease resistance protein signature 380 394 - -
Vium11945g00001 1274 PRINTS Disease resistance protein signature 993 1009 - -
Vium11945g00001 1274 MobiDBLite consensus disorder prediction 1255 1274 - -
Vium11945g00001 1274 SUPERFAMILY RNI-like 2 679 - -
Vium11945g00001 1274 SUPERFAMILY L domain-like 740 1026 - -
Vium11945g00001 1274 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 723 942 IPR044974 GO:0006952
Vium11945g00001 1274 SUPERFAMILY "Winged helix" DNA-binding domain 415 538 IPR036390 -
Vium11945g00001 1274 Gene3D - 344 429 IPR042197 -
Vium11945g00001 1274 Pfam C-JID domain 1088 1249 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11945g00001 Vium-Chr11945 400 6556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11945g00001 1 90 WRKY Transcription Factor Family AT4G12020 40.659 9.33e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11945g00001 - - vum:124821015 2520.73