Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11933g00001 ATGCGAGCGTTATTTTCGAGCATGAGAGGTTTTCTTTTTCTTGTGTTGTTGTTGGAGGTGGTTTATGTGGCGGTGACGGCGGTGAACCCCTCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAGGCTTGCGTCTTGGAGCGAGGACGATGAGAGTGCTTGTGGGAGTGGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGAGTGGTGGAGGTTAACCTTGATGGGTTTTCTCTCTCTGGGAGAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTCTAAGGAAGCTTTCTCTGGCGAACAACAACCTCACTGGGGGGATAAACTCCAACATTGCTCAAATAGATAGCCTTAGGGTCATCGATTTGAGTGGCAACAGTCTCTCAGGGGAGGTGTCTGAGGATGTATTCCGACAATGTGGGTCTCTCAGGGCAGTTTCCTTGGCCAGGAACAGGTTTTCTGGGTCCATTCCCTCTACTTTAGGTGCGTGTTCTGCTCTTGCTGCTATTGACCTTTCTAATAACCAGTTTTCTGGTTCTGTCCCCTCTGGGATTTGGTCTTTGAGTGCTCTTAGGTCCCTGGATTTGTCTGATAACTTGTTGGAGGGGGAGATTCCTAAGGGGGTTGAGGCCATGAAGAATTTAAGGACTGTTAGCTTGGCTAGGAATCGGTTGACTGGGAATGTTCCTGGTGGGTTTGGGAGCTGTTCGCTTTTGAGGTCCATTGATTTGGGGAATAATTCATTTTCTGGAAGTCTTCCTGGTGATTTCAAGGAACTTGCATTGTGTGGTTACCTTAGTTTACGAGGGAATGCTTTTTCTGGAGAGCTTCCTGAGTGGATAGGGGAGATGAGAGGTCTTGAGACGTTGGACCTTTCAAACAATGCACTTACTGGTCGGATTCCAAACTCCGTTGGAAATCTTCAGTCATTGAAGATGTTGAATTTTTCTGGGAATAGTTTCACTGGTAGTCTGCCTGAGTCTATGGCTAATTGCATGAAACTTTTGGTGTTGGATGTCAGCCGAAATTCGATGTCCGGGGGGCTTCCATTGTGGATATTCAAGTCAGATTTGGACAAGGTTTTGCTGTCGGAAAATGGAACAAGTGGTAGCAAGAAAAACCCTTTGATTTCCTTGGCTGAAGTTGCAGTTCAAAGTCTTGAAGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACATCTGCTATTGGAGGTTTAAGCAGCTTGCATGTTTTGAATTTAGCAAATAACTCTCTTACGGGTCCTATACCAGCTGTAATTGGTGAGTTGAAAACATGTTCTAGTCTTGACTTGAGCTATAATAAGCTAAATGGAAGTATACCTTGGCAAATAGGAGGAGCTGTGTCATTGAAAGAACTGGTGCTGAAAAAGAACTTCCTAAATGGGAAAATTCCAACGTCAATTGAGAACTGCTCTTTGCTAACCACACTGACCCTGTCCCAAAACTGGCTGAGTGGCCCTATACCTGCTGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCTTACAACAACCTTACTGGAAACCTTCCTAAGCAACTGGCCAACCTTGCCAATCTTCTTTCCTTCAATTTATCTCACAACAACCTGCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACCATTTCGCCCACCTCTGTTTCTGGCAATCCATCACTTTGTGGCGCTGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTCTAAATCCCAACACTTCTACTGACGTTAGCCCAGGTGCATTGCCTCAAACTTTGGGTCACAAAAGAATCATTCTCAGCATTTCGGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTTCGAGTGCGCTCCTCCACATCTCGAGATGCAGCTGCCCTCACATTTTCTGCAGGAGATGAATACAGCCGTTCCCCTACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCTGGTGAGCCTGATTTCAGTTCAGGTGCACATGCTTTGCTCAATAAGGACTGTGAGCTTGGGCGTGGAGGATTTGGTGCAGTGTACCAAACGGTTCTTAGAGATGGTCATTCAGTTGCAATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAGTTAGGAAAAATCAGACACCAAAACCTCGTGGAACTTGAGGGTTATTATTGGACACCATCGCTGCAGCTTCTTATATATGAGTACGTCTCTGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGAAACTTCCTCTCATGGAATGAGAGATTTAATGTGATTCTGGGAACCGCCAAGGCCTTGGCACACTTGCACAATTCCAACATCATTCACTATAACATCAAGTCAACCAATGTACTTCTGGACAGTTATGGTGAACCAAAGATAGGAGACTTTGGCCTAGCAAGGCTGCTACCTATGCTTGACCGATATGTCTTGAGCAGCAAAATCCAGAGTGCGCTCGGCTACATGGCACCGGAGTTTGCCTGCAAAACAGTGAAGATCACCGAGAAGTGTGATGTATACGGGTTTGGTATCCTGGTGTTGGAGATTGTTACAGGGAAGAGGCCAGTGGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAAGCACTTTGGAAGAAGGTAGGGTGGAGGAATGCATTGATGAGAGGCTCCAAGGGAAATTCCCAGCAGAAGAAGCCATTCCTGTAATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2937 0.4569 MRALFSSMRGFLFLVLLLEVVYVAVTAVNPSLNDDVLGLIVFKADIRDPKGRLASWSEDDESACGSGWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINSNIAQIDSLRVIDLSGNSLSGEVSEDVFRQCGSLRAVSLARNRFSGSIPSTLGACSALAAIDLSNNQFSGSVPSGIWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRTVSLARNRLTGNVPGGFGSCSLLRSIDLGNNSFSGSLPGDFKELALCGYLSLRGNAFSGELPEWIGEMRGLETLDLSNNALTGRIPNSVGNLQSLKMLNFSGNSFTGSLPESMANCMKLLVLDVSRNSMSGGLPLWIFKSDLDKVLLSENGTSGSKKNPLISLAEVAVQSLEVLDLSHNAFSGEITSAIGGLSSLHVLNLANNSLTGPIPAVIGELKTCSSLDLSYNKLNGSIPWQIGGAVSLKELVLKKNFLNGKIPTSIENCSLLTTLTLSQNWLSGPIPAAVAKLTNLQTVDLSYNNLTGNLPKQLANLANLLSFNLSHNNLQGELPAGGFFNTISPTSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDVSPGALPQTLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTSRDAAALTFSAGDEYSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHNSNIIHYNIKSTNVLLDSYGEPKIGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRSTLEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11933g00001 978 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 689 771 - -
Vium11933g00001 978 ProSiteProfiles Protein kinase domain profile. 695 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11933g00001 978 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 588 - -
Vium11933g00001 978 Pfam Protein tyrosine and serine/threonine kinase 697 963 IPR001245 GO:0004672|GO:0006468
Vium11933g00001 978 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 313 - -
Vium11933g00001 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 222 965 - -
Vium11933g00001 978 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 772 973 - -
Vium11933g00001 978 Gene3D Ribonuclease Inhibitor 33 314 IPR032675 -
Vium11933g00001 978 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Vium11933g00001 978 SUPERFAMILY Protein kinase-like (PK-like) 698 968 IPR011009 -
Vium11933g00001 978 SUPERFAMILY L domain-like 80 188 - -
Vium11933g00001 978 Gene3D Transferase(Phosphotransferase) domain 1 772 976 - -
Vium11933g00001 978 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Vium11933g00001 978 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Vium11933g00001 978 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Vium11933g00001 978 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Vium11933g00001 978 Pfam Leucine Rich repeat 514 529 IPR001611 GO:0005515
Vium11933g00001 978 Gene3D Ribonuclease Inhibitor 315 588 IPR032675 -
Vium11933g00001 978 SUPERFAMILY RNI-like 157 557 - -
Vium11933g00001 978 CDD STKc_IRAK 701 967 - -
Vium11933g00001 978 Gene3D Phosphorylase Kinase; domain 1 689 771 - -
Vium11933g00001 978 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Vium11933g00001 978 SMART LRR_typ_2 125 149 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 514 537 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 222 245 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 538 562 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 198 221 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 418 442 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 394 417 IPR003591 -
Vium11933g00001 978 SMART LRR_typ_2 294 318 IPR003591 -
Vium11933g00001 978 PRINTS Leucine-rich repeat signature 297 310 - -
Vium11933g00001 978 PRINTS Leucine-rich repeat signature 514 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11933g00001 Vium-Chr11933 7753 12394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11933g00001 9 978 Receptor kinase-like Gene Family AT3G56370 67.520 0.0 1286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vium11933g00001 PK_Tyr_Ser-Thr 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11933g00001 - - gmx:100791629 1713.74