Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11918g00001 TATGTGGTCATTTATGCATATAATTTACTTTTTCAGTCTACTATTGCAATTGCGGTTGCTGTTGAGAAACCTCTAGATGCTCATGCATCAGAACACGGGCCTGAAGTCGATGGATTTAATGATCATCGAACAGCACCTTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCGGCCTTTTTCACGTATGTCAAAGCATCTATACTGAAGAGCAACTTTGAAGGGGTTGTTAACGTTGACAACCATGGTGCTGCTCATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAATGACCTTCAAACACGTGAAAATGGAGAGACCTGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAGTAGTATACCTGATTCTCTCTCTATGGAAAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCCCCGCAAAAGCACAAAGAAGAAAATTTCCATCACGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCATGAAGTATCTGGCATGTCTTCTCAACATACTTATCCATATTATATTTCAGGAGTTGTTAATCATGTCATGATGCCTTCATCTGCACAGATGTATCACCAGAAGAATATGCAGGACCTACAGAATCATCCTAGTGCAGCTATGATTGCTCAATACAGTCATCTTCCCCAAGGTGGTCCTCACGGACCAGGGATGACATCTTTCCCATACTACCCAATGAGTATATGCTTACAACCTGGTCAGGTCCCTCAACCCCATTCATGGCCATCATTTGGCAGCTCGAGTTCATCAGAAGCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACAGGAAACGACTTGCTGAAAGACGGCCTCGAGTGAGGGGACAGTTTGTCAGAAAATTAAACAGTGCCAATGTTGATCTCAATGGCCAGCCTGCATCAATTGACTATGATGAAGATGATGAAGAGGATGAAGATGATCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA 1086 0.43 YVVIYAYNLLFQSTIAIAVAVEKPLDAHASEHGPEVDGFNDHRTAPFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNHGAAHVRMEVMHQACAQQGVNDLQTRENGETCESQSQDDLPSSSSIPDSLSMERSCTPPASMEVSPQKHKEENFHHGVMHPRNGTHCSEHEVSGMSSQHTYPYYISGVVNHVMMPSSAQMYHQKNMQDLQNHPSAAMIAQYSHLPQGGPHGPGMTSFPYYPMSICLQPGQVPQPHSWPSFGSSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPASIDYDEDDEEDEDDQGARDSSPEDA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11918g00001 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 88 333 IPR045281 GO:0009909
Vium11918g00001 361 ProSiteProfiles CCT domain profile. 281 323 IPR010402 GO:0005515
Vium11918g00001 361 MobiDBLite consensus disorder prediction 258 273 - -
Vium11918g00001 361 MobiDBLite consensus disorder prediction 111 147 - -
Vium11918g00001 361 MobiDBLite consensus disorder prediction 258 277 - -
Vium11918g00001 361 MobiDBLite consensus disorder prediction 31 54 - -
Vium11918g00001 361 MobiDBLite consensus disorder prediction 326 361 - -
Vium11918g00001 361 Pfam CCT motif 281 323 IPR010402 GO:0005515
Vium11918g00001 361 MobiDBLite consensus disorder prediction 337 361 - -
Vium11918g00001 361 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11918g00001 Vium-Chr11918 16 1803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11918g00001 13 360 Response Regulator Gene Family AT5G61380 40.288 5.39e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium11918g00001 CCT 1.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11918g00001 K12127 - gmx:100799728 584.334