Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11916g00002 ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTGCCAACAACGAGATTCCTGCGGCCGAGACCCTATTCTGGTATAGCAAAACTGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGGCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCTATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCAAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGACTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACCATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 927 0.5318 MAGLFSLGGGRGSNNNQQDNTANNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMPPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYDHGPENSNNNNSNNNSNNYMAGETSAGVAGAQPLNLTASGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11916g00002 308 Pfam Domain of unknown function (DUF702) 102 237 - -
Vium11916g00002 308 Coils Coil 146 169 - -
Vium11916g00002 308 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 292 IPR007818 GO:0003700|GO:0006355
Vium11916g00002 308 NCBIfam LRP1 C-terminal domain 188 236 IPR006511 -
Vium11916g00002 308 MobiDBLite consensus disorder prediction 1 22 - -
Vium11916g00002 308 MobiDBLite consensus disorder prediction 157 189 - -
Vium11916g00002 308 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11916g00002 Vium-Chr11916 8097 10652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11916g00002 1 308 C2H2 Transcription Factor Family AT3G51060 44.624 2.19e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium11916g00002 DUF702 1.5e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11916g00002 - - gmx:100781981 452.21