Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11916g00001 ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTGCCAACAACGAGATTCCTGCGGCCGAGACCCTATTCTGGTATAGCAAAACTGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGGCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCTATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCAAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGACTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGAAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACCATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 930 0.5312 MAGLFSLGGGRGSNNNQQDNTANNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMPPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYDHGPENSNNNNSNNNSNNYMAGETSAGVAGAQPLNLTASGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11916g00001 309 Coils Coil 146 169 - -
Vium11916g00001 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
Vium11916g00001 309 MobiDBLite consensus disorder prediction 1 22 - -
Vium11916g00001 309 Pfam Domain of unknown function (DUF702) 102 238 - -
Vium11916g00001 309 NCBIfam LRP1 C-terminal domain 189 237 IPR006511 -
Vium11916g00001 309 MobiDBLite consensus disorder prediction 143 191 - -
Vium11916g00001 309 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11916g00001 Vium-Chr11916 8097 11204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11916g00001 1 309 C2H2 Transcription Factor Family AT3G51060 44.355 2.61e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vium11916g00001 DUF702 7.4e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11916g00001 - - gmx:100781981 449.514