Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11915g00004 ATGACTATAATCTGTACTGTGCTGTGCATACTCATACAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATATTGACTACTAGAATTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTGCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACGTATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGTCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCAACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGGAATGAGATTGCCTCTGCCATCTCTGCTATGAATCCAAACCCTGTCTCCTTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAATGGAACCTGTTTTTGATGCCAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATACTGGAGAAGTCTTTGAGACTCTTTTTTCAGCAAAAGGATTTATTGGAGGTATAA 663 0.3982 MTIICTVLCILIQVRRGILPRLLEEILTTRIMVKQAIKKLAPAEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNQHEKWNARVIYGDTDSMFVLLKGRTLKESFQIGNEIASAISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQMEPVFDAKGIETVRRDTCGAVAKILEKSLRLFFQQKDLLEV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11915g00004 220 ProSitePatterns DNA polymerase family B signature. 113 121 IPR017964 GO:0000166|GO:0003676
Vium11915g00004 220 Gene3D Helix hairpin bin 12 72 - -
Vium11915g00004 220 FunFam DNA polymerase zeta 13 72 - -
Vium11915g00004 220 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 13 220 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vium11915g00004 220 Gene3D Palm domain of DNA polymerase 73 183 IPR023211 -
Vium11915g00004 220 Pfam DNA polymerase family B 13 214 IPR006134 GO:0000166|GO:0003677
Vium11915g00004 220 SUPERFAMILY DNA/RNA polymerases 15 216 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11915g00004 Vium-Chr11915 16036 17992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11915g00004 14 217 Core DNA Replication Machinery Family AT5G63960 38.863 1.43e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11915g00004 K02350 - vum:124822026 433.721