Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11915g00002 ATGGAAACTTGCAACGAGTATGTTACAAATAAAACCCTTACATCTAATGGGACAAAGGTTGCCAACACTCTCTACCAAAATGATGGCTCTCACCTTTACCTATTAACGCCTAATATTTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTTGTAATGAGAGAGGGCATATTGTTGAGCATATACATCAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGCATGAAGATGCTGAATCAGAACAGAGCCCCGAATGCAATAGAGAAGGACAAACAGAAAGAGTGAAAACACTTCTTGATGACTCACAAGATACTTCTCAGATATCTGCCCCTGATGGAAAATCAATCTATACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAGTCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAATGACAGTGATTCTGATGTTGAAGTTCTAGTTCTTTTACACAGTAAATTCGTAACTTGTCAGAGAAATTTTGATGGTCTATCTGGCTCTAAAGTATTAGTCTTCACTGATGAAAAGCTATTGTTAAAAGAATTCATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCCCATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTTGATATTTTCTGATGATATGAAAAGTTCTGAAAAAGATATCTTGGAGCTGGACATTGATGACACTCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATCGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGTAGAATTGTTCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCAGTTGAATCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCGTTTCACCACAAAGTGCTGACAAAGTGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTGATCGAGAGAGTAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTACCTTGCTATCTCACCTGGAAATCAACAGGTTCTCACAAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAG 1404 0.401 METCNEYVTNKTLTSNGTKVANTLYQNDGSHLYLLTPNILPPSVDTVHRWLLCNERGHIVEHIHQETDAENKDVPKCASETEPPLRPKLHEDAESEQSPECNREGQTERVKTLLDDSQDTSQISAPDGKSIYTPLSQIGFRDPASVGCGQQLTLLSIEILAESRADLLPDPQFDGINIIALGFQNDSDSDVEVLVLLHSKFVTCQRNFDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLIFSDDMKSSEKDILELDIDDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERVKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVLTRLLLNLLWSAFL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11915g00002 467 MobiDBLite consensus disorder prediction 65 128 - -
Vium11915g00002 467 Pfam DNA polymerase family B, exonuclease domain 150 302 IPR006133 -
Vium11915g00002 467 Gene3D - 180 455 IPR036397 GO:0003676
Vium11915g00002 467 MobiDBLite consensus disorder prediction 65 115 - -
Vium11915g00002 467 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 14 454 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vium11915g00002 467 SUPERFAMILY Ribonuclease H-like 150 440 IPR012337 -
Vium11915g00002 467 FunFam DNA polymerase 159 460 - -
Vium11915g00002 467 CDD DNA_polB_zeta_exo 149 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11915g00002 Vium-Chr11915 4155 8460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11915g00002 154 442 Core DNA Replication Machinery Family AT5G63960 24.675 1.23e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11915g00002 K02350 - vum:124820999 895.19