Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11915g00001 ATGGAAACTTGCAACGAGTATGTTACAAATAAAACCCTTACATCTAATGGGACAAAGGTTGCCAACACTCTCTACCAAAATGATGGCTCTCACCTTTACCTATTAACGCCTAATATTTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTTGTAATGAGAGAGGGCATATTGTTGAGCATATACATCAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGCATGAAGATGCTGAATCAGAACAGAGCCCCGAATGCAATAGAGAAGGACAAACAGAAAGAGTGAAAACACTTCTTGATGACTCACAAGATACTTCTCAGATATCTGCCCCTGATGGAAAATCAATCTATACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAGTCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAATGACAGTGATTCTGATGTTGAAGTTCTAGTTCTTTTACACAGTAAATTCGTAACTTGTCAGAGAAATTTTGATGGTCTATCTGGCTCTAAAGTATTAGTCTTCACTGATGAAAAGCTATTGTTAAAAGAATTCATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCCCATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCATCTGAGTCTTTGATATTTTCTGATGATATGAAAAGTTCTGAAAAAGATATCTTGGAGCTGGACATTGATGACACTCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATCGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGTAGAATTGTTCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCAGTTGAATCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCGTTTCACCACAAAGTGCTGACAAAGTGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTGATCGAGAGAGTAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTACCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCTAATACACTTGGGGTTAGTCCCTTCTCACCAGAGCAACATGTTCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTGATTCAGTTAATATTTTTTTTCCTATTCTCTAGCTCCTTTTGTATTTTGAAGTCCTAA 1692 0.3972 METCNEYVTNKTLTSNGTKVANTLYQNDGSHLYLLTPNILPPSVDTVHRWLLCNERGHIVEHIHQETDAENKDVPKCASETEPPLRPKLHEDAESEQSPECNREGQTERVKTLLDDSQDTSQISAPDGKSIYTPLSQIGFRDPASVGCGQQLTLLSIEILAESRADLLPDPQFDGINIIALGFQNDSDSDVEVLVLLHSKFVTCQRNFDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLIFSDDMKSSEKDILELDIDDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERVKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPSKVIQLIFFFLFSSSFCILKS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11915g00001 563 SMART polmehr3 150 563 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium11915g00001 563 MobiDBLite consensus disorder prediction 65 128 - -
Vium11915g00001 563 SUPERFAMILY Ribonuclease H-like 150 440 IPR012337 -
Vium11915g00001 563 Pfam DNA polymerase family B, exonuclease domain 150 302 IPR006133 -
Vium11915g00001 563 SUPERFAMILY DNA/RNA polymerases 425 547 IPR043502 -
Vium11915g00001 563 Gene3D - 180 460 IPR036397 GO:0003676
Vium11915g00001 563 MobiDBLite consensus disorder prediction 65 115 - -
Vium11915g00001 563 FunFam DNA polymerase 159 460 - -
Vium11915g00001 563 CDD DNA_polB_zeta_exo 149 399 - -
Vium11915g00001 563 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 14 545 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vium11915g00001 563 Pfam DNA polymerase family B 418 512 IPR006134 GO:0000166|GO:0003677
Vium11915g00001 563 Gene3D Palm domain of DNA polymerase 465 545 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11915g00001 Vium-Chr11915 4155 8731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11915g00001 154 541 Core DNA Replication Machinery Family AT5G63960 27.027 3.47e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11915g00001 K02350 - vum:124820999 1084.32