Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11900g00005 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATCGGAAGAAACGGCAGCGTTGGTGGCTTTGGATTATCTTCGGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGGTCCAGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAACTTCTCCCTTTGGACATGCCCCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCGCGAAGATGACTTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAACATCAGATCCAGGAAATGGAAGCGTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTAGAGAGTTAGGGTTAGAGCCTTTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATAAAGACACAGCATGAACGCCATGAGAACACACAGCTCCGAACTGAAAACGACAAGCTTCGAGCTGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCCTGTCCTAACTGTGGAGGACCAACAGCTATAGGGGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAATGCTCGCCTCAGAGAAGAGATTGACAGGATTTCTGCAATTGCTGCAAAGTACGTGGGGAAGCCTGTGGTGAGTTATCCACTTCTTTCTCCTTCGTCTGTTCCTCCTCGTCCACTTGAGCTTGGGATTGGAGGTGGTTTTGGTGGCCAGCCTGCGGGCATTGGTGGAGACATGTACGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATCAGTGGACCTACTGAGGCTGATAAACCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAACTCATTGGAATGGCGCAAATGGGTGATCCTCTTTGGTTGACTACTCTGGATGGCACAACCACTGTTCTCAATGAAGATGAATACATCAGGTCTTTTCCTAGAGGAATTGGTCCTAAACCAGCTGGTTTCAATTGTGAAGCTTCACGAGAAACTGCAGTTGTTATCATGAACCATGTTAGCCTTGTTGAGATTCTCATGGACGTGAACCAATGGTCCACAGTGTTCTCTGGCATTGTCTCTAGAGCAATGACTTTGGAGGTGTTATCAACTGGGGTGGCAGGAAACTACAACGGTGCATTGCAAGTGATGACAGCAGAATTACAAGTACCTTCACCCCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGATATTGTAAGCAGCATGGTGATGGGACTTGGGCTGTAGTGGACGTATCCTTGGATAATTTGCGACCTAGTCCCTCAGCCAGATGTAGAAGAAGACCTTCAGGCTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATTTGGGTTGAGCATGTTGAGGTGGATGATAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGTTCTGGGCATGCATTTGGTGCAAAACGTTGGATTGCCACCTTGGATAGACAATGTGAAAGGCTTGCTTGCGCCATGGCAACAAACATACCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTTATAAGTTTTTGTGCTGGAGTGAGTGCATCCACTGCACACACATGGACAACACTCTCTGGAACTGGAGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTTGATGACCCAGGAAGGCCTCCTGGCATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCTAATGGAGGAGTAGTCCAAGAAATGGCACACATCGCCAATGGAAGAGACACAGGAAACTGTGTCTCTCTACTTCGTGTGAATAGTGCGAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCGCAGACTCAACGGGTTCATTTGTGATATATGCTCCAGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGAGACCCTGATTACGTGGCCCTTCTTCCTTCAGGATTTGCTATTCTCCCAGATGGGACCACTGCACATGGAGGAAGCATAGGTGACACTGGAAATGGTGGATCTCTTTTGACTGTAGCCTTCCAAATCTTGGTTGATTCAGTTCCAACTGCAAAACTCTCTCTTGGATCTGTTGCCACTGTTAACAATCTTATTGCCTGCACTGTTGAGAGAATTAAGACTGCTTTATCTGGTGAAGTTGCTTGA 2349 0.4687 MPAGIMIPARNMPSMIGRNGSVGGFGLSSGLSLGQIENHKGPESQRSVEMFQPNLMEAGQLLPLDMPQNTSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKTQHERHENTQLRTENDKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGGFGGQPAGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFNCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLACAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGSIGDTGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKTALSGEVA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11900g00005 782 SUPERFAMILY Bet v1-like 294 524 - -
Vium11900g00005 782 Pfam START domain 304 523 IPR002913 GO:0008289
Vium11900g00005 782 ProSiteProfiles START domain profile. 294 526 IPR002913 GO:0008289
Vium11900g00005 782 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Vium11900g00005 782 FunFam Homeobox-leucine zipper protein GLABRA 2 303 522 - -
Vium11900g00005 782 FunFam Homeobox-leucine zipper protein HDG1 95 182 - -
Vium11900g00005 782 SUPERFAMILY Bet v1-like 543 774 - -
Vium11900g00005 782 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 107 777 IPR042160 -
Vium11900g00005 782 CDD START_ArGLABRA2_like 298 522 - -
Vium11900g00005 782 Coils Coil 172 192 - -
Vium11900g00005 782 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Vium11900g00005 782 SMART START_1 303 523 IPR002913 GO:0008289
Vium11900g00005 782 Gene3D - 360 520 IPR023393 -
Vium11900g00005 782 CDD homeodomain 109 167 IPR001356 GO:0003677
Vium11900g00005 782 SMART HOX_1 107 170 IPR001356 GO:0003677
Vium11900g00005 782 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Vium11900g00005 782 Gene3D - 94 182 - -
Vium11900g00005 782 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Vium11900g00005 782 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11900g00005 Vium-Chr11900 34423 41393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11900g00005 50 782 Homeobox Transcription Factor Family AT1G05230 78.455 0.0 1166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium11900g00005 START 4e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11900g00005 K09338 - gmx:100809556 1451.8