Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium118g00004 | ATGGAGGATTACCATGTTGCAAAGTTTGTTCAGATGCAGGAAAAAGAAGTGGGTTTGTTTGCTATTTATGATGGCCACAGGGGAGATACTGTGCCTTCCTACTTACAGAAACATTTGTTTTCTAGCATTTTAAAGGAGGAAGAATTTTGGGATAACCCTGCAGAGTCTATATCCAAAGCATATCAGAACACAGATCAGGAGATTCTTTCACATAGTTCTGATCTGGGGCATGGTGGATCGACAGCTGTAACTGCAATATTAATCAATGGCCAAAGGTTATGGATAGCTAATGTAGGAGATTCACGCGCAGTTGTTTCAAGACAAGGTCAAGCAGTGCAAATGACAACAGATCATGAACCCAACACAGAGCGAGGCATCATTGAGAATAAAGGAGGTTTTGTCTCCAACATGCCAGGTGATGTGCCTAGAGTAAATGGGCAACTTGCTGTTTCTCGTGCATTTGGAGACAAGAGCCTCAAGTCACATTTACGATCAGACCCTGATGTGCAGACTACTGAGGTAGATATTGATATTGATATTCTCATCCTTGCCAGTGATGGACTTTGGAAGGTAATGCCTAATCAAGAGGCAGTGGATATTGCTAGAAGGATCAGAGACCCTCTGAAAGCAGCTAAGAAATTAACAGCTGAAGCATTAAGAAGAGACAGTAAAGATGATATCTCTTGCATTGTTGTTAGATTTAGGTGTTAA | 711 | 0.4135 | MEDYHVAKFVQMQEKEVGLFAIYDGHRGDTVPSYLQKHLFSSILKEEEFWDNPAESISKAYQNTDQEILSHSSDLGHGGSTAVTAILINGQRLWIANVGDSRAVVSRQGQAVQMTTDHEPNTERGIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQTTEVDIDIDILILASDGLWKVMPNQEAVDIARRIRDPLKAAKKLTAEALRRDSKDDISCIVVRFRC | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium118g00004 | 236 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 234 | IPR001932 | - | |
| Vium118g00004 | 236 | CDD | PP2Cc | 1 | 234 | IPR001932 | - | |
| Vium118g00004 | 236 | SMART | PP2C_4 | 1 | 232 | IPR001932 | - | |
| Vium118g00004 | 236 | SUPERFAMILY | PP2C-like | 1 | 235 | IPR036457 | - | |
| Vium118g00004 | 236 | Gene3D | - | 1 | 236 | IPR036457 | - | |
| Vium118g00004 | 236 | SMART | PP2C_SIG_2 | 4 | 234 | IPR001932 | - | |
| Vium118g00004 | 236 | PANTHER | PROTEIN PHOSPHATASE | 1 | 234 | IPR015655 | GO:0004722|GO:0006470 | |
| Vium118g00004 | 236 | FunFam | Probable protein phosphatase 2C 39 | 1 | 235 | - | - | |
| Vium118g00004 | 236 | Pfam | Protein phosphatase 2C | 1 | 227 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium118g00004 | Vium-Chr118 | 15864 | 17034 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium118g00004 | 1 | 235 | PP2C-type Phosphatase Gene Family | AT1G22280 | 71.369 | 9.65e-129 | 363 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium118g00004 | K17506 | - | qsu:111997274 | 384.415 |