Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00011 ATGACCAACTCTTTTAAAAACAAGTTGGGGCAAGGAGGCTTCGGTGGCGTATATAAAGGGAAGTTACATGATGGACGTGTTGTTGCAGTAAAGATTTTAGCTGAATCAAAAGGCAACGGCGAAGAATTTATCAATGAAGTCGCAAGTATCAGTACAACTTCACATGTTAACATTGTCAGACTCCTGGGATTTTGTTTTGATGGTTCTAAACGTGCTCTGATATATGAGTTTATGTCTAATGGATCTCTTGACAAGTTCATATATCAAGACCAAAATCCATTACAGGTTGCTCATCGATTGGATTGCCAGATAATGTATAACATTGCAATTGGCATTGCTCGTGGATTAGAGTATTTACACAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAACATATTACTGGATGAGAATTTTAGTCCCAAAATTTCAGATTTTGGACTTGCAAAAATATGTCCAACAAGAGAAAGTGCGGTATCCATTACTGGTGCGAGGGGAACTGCAGGTTATATTGCTCCAGAAGTTTTCTGCAGAAACTTTGGCGCCGTGTCACATAAATCAGATGTTTACAGCTATGGAATGATGATCTTGGAAATGGTTGGTAGAAGAAATAATATTAAGATTGAAATCGATCGTTCAAGTGAATTGTATTTTCCTTATTGGATTTACGATCGTCTTGAATCAAATCAAGAGCTTGATCTGCAAATTGTAAGGAATGAAAGTGATGACAAAATGATGAGAAAAATGGCAATGGTAGGTTTGTGGTGCATACAAACTCACCCTTCAAGTCGACCAACAATAAGTGGCGTGGTGGAAATGTTACAGAAAAAAGTTGAATTATTGGAATTTCCGCCTAAACCGTTTTTGTCTTCTCCTTCACCATCTCCGCCTCATTTATCACGGGAGACACTATAG 927 0.3797 MTNSFKNKLGQGGFGGVYKGKLHDGRVVAVKILAESKGNGEEFINEVASISTTSHVNIVRLLGFCFDGSKRALIYEFMSNGSLDKFIYQDQNPLQVAHRLDCQIMYNIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICPTRESAVSITGARGTAGYIAPEVFCRNFGAVSHKSDVYSYGMMILEMVGRRNNIKIEIDRSSELYFPYWIYDRLESNQELDLQIVRNESDDKMMRKMAMVGLWCIQTHPSSRPTISGVVEMLQKKVELLEFPPKPFLSSPSPSPPHLSRETL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00011 308 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vium11899g00011 308 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vium11899g00011 308 PIRSF ILK 3 286 - -
Vium11899g00011 308 ProSiteProfiles Protein kinase domain profile. 3 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00011 308 FunFam PR5-like receptor kinase 78 289 - -
Vium11899g00011 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vium11899g00011 308 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Vium11899g00011 308 Gene3D Transferase(Phosphotransferase) domain 1 78 291 - -
Vium11899g00011 308 Pfam Protein kinase domain 6 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00011 308 SUPERFAMILY Protein kinase-like (PK-like) 5 279 IPR011009 -
Vium11899g00011 308 SMART serkin_6 3 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00011 Vium-Chr11899 51487 52413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00011 1 294 Receptor kinase-like Gene Family AT4G18250 56.623 2.09e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium11899g00011 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00011 - - gmx:100778621 468.774