Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00010 ATGGTGAAAATAGCTTCGGCAGTGGGGGTTGTTGGAGTTGTAGTGGTGGTAATCTTGGCTTGTTGGTTTAGGACAAAGATCTATCCCTCGTCTCGTTTGTTTCGGAGGGATAACCCAACCCATCATGTTATTCAGAAGTTTTTGAAGGAACGGGGACCTCTTCCTATAACTAGGCACAATTATTCAGAGATTAAGAAAATGACCAACTCTTTTAAAAACAAGTTGGGGCAAGGAGGCTTCGGTGGCGTATATAAAGGGAAGTTACATGATGGACGTGTTGTTGCAGTAAAGATTTTAGCTGAATCAAAAGGCAACGGCGAAGAATTTATCAATGAAGTCGCAAGTATCAGTACAACTTCACATGTTAACATTGTCAGACTCCTGGGATTTTGTTTTGATGGTTCTAAACGTGCTCTAATATATGAGTTTATGTCTAATGGATCTCTTGACAAGTTCATATATCAAGACAAAAATCCATTACAGGTTGCTCATCGATTGGATTGCCAGATAATGTATAACATTGCAATTGGCATTGCTCGTGGATTAGAGTATTTACACAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAACATATTACTGGATGAGAATTTTAGTCCCAAAATTTCAGATTTTGGACTTGCAAAAATATGTCCAACAAGAGAAAGTGCGGTATCCATTACTGGTGCGAGGGGAACTGCAGGTTATATTGCTCCAGAAGTTTTCTGCAGAAACTTTGGCGCCGTGTCACATAAATCAGATGTTTACAGCTATGGAATGATGATCTTGGAAATGGTTGGTAGAAGAAATAATATTAAGATTGAAATCGATCGTTCAAGTGAATTGTATTTTCCTTATTGGATTTACGATCGTCTTGAATCAAATCAAGAGCTTGATCTGCAAATTGTAAGGAATGAAAGTGATGACAAAATGATGAGAAAAATGGCAATGGTAGGTTTGTGGTGCATACAAACTCACCCTTCAAGTCGACCAACAATAAGTGGCGTGGTGGAAATGTTACAGAAAAAAGTTGAATTATTGGAATTTCCGCCTAAACCGTTTTTGTCTTCTCCTTCACCATCTCCGCCTCATTTATCACGGGAGACACTATAG 1125 0.3867 MVKIASAVGVVGVVVVVILACWFRTKIYPSSRLFRRDNPTHHVIQKFLKERGPLPITRHNYSEIKKMTNSFKNKLGQGGFGGVYKGKLHDGRVVAVKILAESKGNGEEFINEVASISTTSHVNIVRLLGFCFDGSKRALIYEFMSNGSLDKFIYQDKNPLQVAHRLDCQIMYNIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFSPKISDFGLAKICPTRESAVSITGARGTAGYIAPEVFCRNFGAVSHKSDVYSYGMMILEMVGRRNNIKIEIDRSSELYFPYWIYDRLESNQELDLQIVRNESDDKMMRKMAMVGLWCIQTHPSSRPTISGVVEMLQKKVELLEFPPKPFLSSPSPSPPHLSRETL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00010 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vium11899g00010 374 Gene3D Transferase(Phosphotransferase) domain 1 144 357 - -
Vium11899g00010 374 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vium11899g00010 374 SUPERFAMILY Protein kinase-like (PK-like) 53 345 IPR011009 -
Vium11899g00010 374 FunFam PR5-like receptor kinase 144 355 - -
Vium11899g00010 374 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Vium11899g00010 374 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 361 IPR045874 GO:0004672
Vium11899g00010 374 SMART serkin_6 69 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00010 374 FunFam S-receptor-like serine/threonine-protein kinase 40 143 - -
Vium11899g00010 374 ProSiteProfiles Protein kinase domain profile. 69 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00010 374 Pfam Protein kinase domain 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00010 374 Gene3D Phosphorylase Kinase; domain 1 48 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00010 Vium-Chr11899 46696 53864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00010 2 370 Receptor kinase-like Gene Family AT5G38260 50.532 6.31e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium11899g00010 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00010 - - gmx:100778621 531.176