Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00007 ATGAGTCCGGTTCATGGATTCCTATTACTGCTTTTGTTTTCTAAGTTTATGCCACTTCCCTTGGCAGCCGGGGACCATGGAAGGTGTCCACCTTCATTTCCTTGTGGATATCTTGGCAATCTCACTTTCCCTTTTACTTTAACTGAACGCCCCGACTGTGGCTTCTTGTCCATACGAAATTGTAGTGATGATCCACATACGCCCAAATATATCCAATTACAACCAAATGGAGGTTGGGTTCAGGTTGTAACCACATATTCGCTTATTAGTAGCTCTACTATCCGTTTAGCAACTTTTCAATTTAGAGACAAACATTTTTATGATCTTCTGCAGAACCGAAGTTGTGAAGTTTTCAAAAACAGTTATACTCTTCCTCTTAAATCTCACTTTGCTGCTTTTAGATTGTTATACAACACAAGTCTGTTCTTGTGCAACAAGACCCTCAATGTCACAAATAAAAATATGAGCAAGTATAATGCGTGCCATGGCTACGGTATCTACTACAACCACTTCAATAAAACAGACGAGGATGCGTCTCAGAGTTATTTGAAAGCGTGTAAAAAGGTCCTGCTTCCAATTAAAGACGTGCCTGACGCCAGTGACCCATTTACTTTCGTAACTGGCGACGTCACTGTTGCAGTAACATTAACAGATCAATGTTCAGATTGCCACTATCGCAAAGGAGGGCAGTGTCAACTTGACAGCAGAGAGCAATTTTGTTGTGCCAATGCTGCAGCTCCGGAAAAAAGGTTGCGTCGGAAGGTCAAACTGGCTTTAGGTTTAGGCATTGGAGTCCCATGCATGATGTTAATTGGGTTGTTGTTTTTCCTTCTACTCCGCAAACGAAAACATGATACCTCAGGCGGACAACTAAAGTCAAGAGATTCTTATTCAGATTCCTCCTCCATTTCTCTTCGAGCAAATAGTGCCGAATACTTTGGAGTTCCACTCTTCTCTTACGCGCAGCTTAAAGAAGTGACAAACAATTTTGACCATGCTCAGGAACTTGGAGATGGAGGCTTCGGTACTGTCTACTATGGAAAACTCCCAGATGGAAGGGAAGTTGCTGTTAAACGGTTATACGAGCACAATTGGAGGCGAGTAGAACAGTTCATGAACGAAGTTAAAATCCTTACACGGTTGCGTCACAAAAATCTAGTGTCACTCTACGGGTGCACTTCACGGCACAGCCGTGAACTCCTACTTGTGTACGAATACATTTCAAACGGCACCGTAGCATGTCATCTACACGGTGGATTAACCAAGCCACCATGGCCTACACGTATGAAAATTGCCATAGAAACTGCCAGTGCATTGGCTTATCTCCACGCCTCAGACATCATCCACCGTGACGTGAAAACAAACAACATTCTCCTGGACAACAACTTCTGTGTTAAGGTAGCAGATTTTGGTCTTTCAAGAGACTTCCCAAACGATGTAACACATGTCTCCACAGCTCCGCAAGGGTCCCCGGGTTACCTTGACCCTGAATATTATAGCTGCTACCAGCTGACTAGTAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTGATCTCATCCAAGCCTGCTGTTGATATGAACAGAAGTAGGGATGAGATTAACTTGTCAAATCTAGCAGTTAGGAAGATTCAAGAAAGTGCAATTGGTGAGCTTGTAGATCCTTGCCTTGGTTTTGATTCGGACAGTAGGGTTAAGGGGATGATAGTTTCAGTGGCAGGGTTGGCTTTACAGTGTTTGCAGAGGGAAAAGGAGTTGAGACCTTCGATGGATGAGGTGTTGCATGAACTGCAGAGAATTGAGAGTGGGAAGGATGAGATAGATGTTGATAATGGAGGAGTTGCAGAAAGTCGTGCACATTCACCACCACCGGCTTCACCGGAGTGGGACGAAGTTGTACTGTTGAAGAATACGAATCCTACTTCCCCTGACACTGTCACTGATAAATGGGAAAGTAAATGTACTACACCTAATATAAGTGGCTAA 1992 0.4352 MSPVHGFLLLLLFSKFMPLPLAAGDHGRCPPSFPCGYLGNLTFPFTLTERPDCGFLSIRNCSDDPHTPKYIQLQPNGGWVQVVTTYSLISSSTIRLATFQFRDKHFYDLLQNRSCEVFKNSYTLPLKSHFAAFRLLYNTSLFLCNKTLNVTNKNMSKYNACHGYGIYYNHFNKTDEDASQSYLKACKKVLLPIKDVPDASDPFTFVTGDVTVAVTLTDQCSDCHYRKGGQCQLDSREQFCCANAAAPEKRLRRKVKLALGLGIGVPCMMLIGLLFFLLLRKRKHDTSGGQLKSRDSYSDSSSISLRANSAEYFGVPLFSYAQLKEVTNNFDHAQELGDGGFGTVYYGKLPDGREVAVKRLYEHNWRRVEQFMNEVKILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLTKPPWPTRMKIAIETASALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRDFPNDVTHVSTAPQGSPGYLDPEYYSCYQLTSKSDVYSFGVVLIELISSKPAVDMNRSRDEINLSNLAVRKIQESAIGELVDPCLGFDSDSRVKGMIVSVAGLALQCLQREKELRPSMDEVLHELQRIESGKDEIDVDNGGVAESRAHSPPPASPEWDEVVLLKNTNPTSPDTVTDKWESKCTTPNISG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00007 663 Gene3D Phosphorylase Kinase; domain 1 304 406 - -
Vium11899g00007 663 ProSiteProfiles Protein kinase domain profile. 330 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00007 663 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Vium11899g00007 663 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 302 406 - -
Vium11899g00007 663 MobiDBLite consensus disorder prediction 603 663 - -
Vium11899g00007 663 Pfam Protein tyrosine and serine/threonine kinase 333 597 IPR001245 GO:0004672|GO:0006468
Vium11899g00007 663 FunFam Wall-associated receptor kinase-like 20 407 611 - -
Vium11899g00007 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 657 IPR044652 GO:0004672
Vium11899g00007 663 Gene3D Transferase(Phosphotransferase) domain 1 407 618 - -
Vium11899g00007 663 SUPERFAMILY Protein kinase-like (PK-like) 305 599 IPR011009 -
Vium11899g00007 663 SMART serkin_6 330 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00007 663 MobiDBLite consensus disorder prediction 637 663 - -
Vium11899g00007 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vium11899g00007 663 CDD STKc_IRAK 336 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00007 Vium-Chr11899 34118 38753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00007 33 663 Receptor kinase-like Gene Family AT1G25390 47.188 1.71e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium11899g00007 PK_Tyr_Ser-Thr 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00007 - - vra:106771857 1125.15