Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00005 ATGGCTATCGTATATTTGTTCAACTTCCTCTTGTTTTATCACCTTCTACTCATCCTCTGTGCTGGTTATGGATATGGGCACCAAGGTTGTCCACACTCCTTTACTTGTGGCAATCTTGGGTCTTTCCATTACCCTTTTACCAAGGCAGAACAACCAGACTGTGGCTTGATACCCATACATGGTTGTGATAATCCTCTATCAATCCAAAAATTGATCCAGCTGGAGAAAAATGGAAACTACTTTGTGCTTACAGGCAACATTCAGCAGGATGGGATTTCAATTTCGGATGAAGATTTGCACCGGCGTTTACAAAACAACATCTGTGACACTTTGAATAATAGCTACAGTCTTCAATCCCATTCTCCTTTATACTCTTATTATATAAAATATAATGTGACACTGTTCCGATGCAAACATGACCTCAATATGAAACCCCCACCACATTATTTTAATCATTCCTGCACTGAGTATGGTTATGATATCTATTATGACAGCCTTTCCTTACCAAGGAATGATGAAGCTCATAAACTTTTCTCATCCTGCTCAGTTCTTCACTTAGCAAAAAAGGACAAGGCCGATACCACAAACATTCTATCGTTTTTATCTGCTCAGATGGTTGTTCAAGTAGTATTATCTAAGGATTGTGATGAGTGCTATAATCACAGAGGAGGTCAATGTTATCTTGACCGCGATCATCAGTTCTACTGTCACAAAGAGCCAAAGCATAGCAGTAAAACTTTGAGGCTGGTACTTGGACTTGTAACAGGTTTATGCGTGATATTATTAGCCATAGTGCTAACTGGATGCCTTGTATTTAGACGAAAACGCACTCCTTCAGGTCCTCAACACCAATCGAGAAACGCAGACACTGATTCAATTGGTCCCAGCTCAAATCCAGACCCCGAAAATTGCAGGTTCTACTACAGAGTCCCTCTCTTCTCTTACAAGGAGCTTAAAGAAGCTACATACAATTTCCACAACACCAGGCAACTTGGAAGTGGAGGCTTTGGAACCGTTTACTATGGAAAACTGCTAGATGGACGAGAAGTTGCTATCAAGCGTCTCTATGAGCACAACTATAGGCGAGTTGAACAGTTCATGAACGAAGTTCACATCCTCACTCGCTTGCGCCACACAAATCTGGTGTCCCTCTATGGCTGCACTTCACATCGCAGTCGTGAGCTACTGCTCGTGTACGAACACGTTCCAAATGGCACTGTTGCTTGCCATCTCCACGGTGATTTTGCAAGGCCACACACTCTTCCATGGCACATAAGAATGAAAATTGCGATAGAGACCGCAAGTGCATTGTGTTATCTCCATGCTTCTGACATCATCCACCGTGATGTCAAAACCAAAAACATTCTCCTTACCCAAAGTTTCAGTGTTAAGGTTGCTGACTTTGGTCTTTCAAGGCTGTTCCCGAATGATGTCACACATGTCTCCACTGCTCCACTAGGGACCCCAGGTTACCTTGATCCGGAATATCACGAATGCTACCAGCTTACAAGCAAGAGTGATGTGTACAGTTTTGGGGTTGTGCTTATTGAACTGATATCTTCTAAGCCAGCTGTTGATATGAGCAGGCATAGGGATGAGATAAACTTGGCTAACTTGGCAATGAAGAAGATTCAGCAAAGTGCATTTAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCGGACAGTGAGGTAAAGAGGATGATGATTTCAGTGGCAGAATTGGCCTTTCAGTGTTTGCAACGAGACAAAGATTTAAGACCTTCAATGGATGAGGTTTTGAAGGTGCTCGTGAGAATTGAAAATGATATGCCTGAGCATCTGGATGAAGAACAATTAAGTCCACCCTCTCTACCTTCACCAGATTGGGATGAGAATGGATTATTGAAAAACTTGACGGTACAACTTTCACCTAAAGCCGTCACTGATAGATGGCACAGTGAATCTACTGCCTCTAATGCCAGTGCTTAA 1971 0.4247 MAIVYLFNFLLFYHLLLILCAGYGYGHQGCPHSFTCGNLGSFHYPFTKAEQPDCGLIPIHGCDNPLSIQKLIQLEKNGNYFVLTGNIQQDGISISDEDLHRRLQNNICDTLNNSYSLQSHSPLYSYYIKYNVTLFRCKHDLNMKPPPHYFNHSCTEYGYDIYYDSLSLPRNDEAHKLFSSCSVLHLAKKDKADTTNILSFLSAQMVVQVVLSKDCDECYNHRGGQCYLDRDHQFYCHKEPKHSSKTLRLVLGLVTGLCVILLAIVLTGCLVFRRKRTPSGPQHQSRNADTDSIGPSSNPDPENCRFYYRVPLFSYKELKEATYNFHNTRQLGSGGFGTVYYGKLLDGREVAIKRLYEHNYRRVEQFMNEVHILTRLRHTNLVSLYGCTSHRSRELLLVYEHVPNGTVACHLHGDFARPHTLPWHIRMKIAIETASALCYLHASDIIHRDVKTKNILLTQSFSVKVADFGLSRLFPNDVTHVSTAPLGTPGYLDPEYHECYQLTSKSDVYSFGVVLIELISSKPAVDMSRHRDEINLANLAMKKIQQSAFSELVDPSLGFDSDSEVKRMMISVAELAFQCLQRDKDLRPSMDEVLKVLVRIENDMPEHLDEEQLSPPSLPSPDWDENGLLKNLTVQLSPKAVTDRWHSESTASNASA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00005 656 MobiDBLite consensus disorder prediction 281 299 - -
Vium11899g00005 656 Gene3D Phosphorylase Kinase; domain 1 300 401 - -
Vium11899g00005 656 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00005 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vium11899g00005 656 SUPERFAMILY Protein kinase-like (PK-like) 308 614 IPR011009 -
Vium11899g00005 656 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 11 650 IPR044652 GO:0004672
Vium11899g00005 656 MobiDBLite consensus disorder prediction 607 626 - -
Vium11899g00005 656 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00005 656 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Vium11899g00005 656 Gene3D Transferase(Phosphotransferase) domain 1 402 610 - -
Vium11899g00005 656 Pfam Protein kinase domain 325 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00005 656 FunFam Wall-associated receptor kinase-like 20 402 610 - -
Vium11899g00005 656 MobiDBLite consensus disorder prediction 276 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00005 Vium-Chr11899 28518 31341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00005 29 656 Receptor kinase-like Gene Family AT1G25390 47.724 2.09e-177 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium11899g00005 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00005 - - gmx:100791822 1008.05