Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00004 ATGGTCTGGCTTCTTTTTTTCAAATCGCTAATAGTATTTTTGTCACAGCTTTTTCTGATTGTATCAGCTCAGAATGGAAGGTGTCCACCATATTCGGACTGTGGATTTCTTGGGCGCATTCGGTTTCCTTTCACAACCACCGAGCAACAAAACTGCGGCTTATTGGCTATACATGGCTGTCAACAACTTCCTCCTTCCGCTCCCAAAACTATCAAACTAGGCACCTCCACATCAACCTCGTACTCTGTTCTAAGGGTAGAACCTCGTACAATATATATCTCAGAAGATGAACAAGAACGTAATTTGCGAAACAGAAGTTGCAAAGCGTTCAGCAAGAATGTTAATCTTCCTCACACCTCTCCTTTAGCTTCTTTCGTCAACAAATACAATATCACCATCTTCAGATGCAATAAGTCCCTGAAACCCTCCCTTTCCAAGGATTTTCATAAATATTCAAACTGTTCTGAGTTCGACATCTTCTATGGCCATCCAAATATACTAACTCCTCCGGGTTTCCAGTGGCCCCGCTCTTTAGCATCATGCTCAACCGTTCAGCTTCCTGTAGAAGGAAGTATTACCGACGACCCCTTTCAATTTGTAATCAGTACTACTGCTATTGAAGTTCAGTTATCGAAAGAATGTGAAAGGTGTCTTGGTTATCGAAAAGGACGATGTTTACTTGACATTAAAGGAAAATTCTATTGCGCCACAGAGCAGCGGAATTTGGCATGGAAGTTAGGAGTAGGTATTGGAATGTCGGCTACTGTTATCATTGTACTACTAATACTATGGAACCGCAAACCCAAATGTTTGTTTGGTTTCTTTTCAAATCGAAACCCAGTAAGTGCGAGTATCTACTTTGGGGTCCCTGTCTTCACTTATAAGGATCTTGTAATAGCAACAAAAAGTTTTGATCGTTCAAGAGAACTGGGAGAAGGAGGCTTTGGGATCGTTTACTATGGAAAACTCCAGGATGGACGTGAAGTTGCTGTGAAGCGGCTATATGAGCACAACTATAGGAGAGTAGAACAGTTCATGAATGAAATCAAGATCCTCACACGCTTGCGCAACAAAAACTTAGTGTCTCTCTATGGCTGCACTTCATATGACAGCCGTGAACTACTGCTTGTTTATGAATACATTTCAAATGGAACTGTGGCCAGTCACCTCCATCGTCGTGAATCAACGACTCATGCCTCTTTGCCGTGGCTTATCCGAATGAAAGTGGCCATTGAGACTGCTACTGCATTGGCCTATCTCCATGCCTCTGACATCATTCACCGCGATGTCAAAACTAGCAACATTCTGCTTGACGACACTTTCTGTGTTAAAGTTGCAGATTTTGGATTGTCGAGACTGTTCCCTGTTGATGTCACCCATGTTTCCACTGCTCCACAAGGCACCCCTGGCTATGTTGATCCTGAATATCACCGCTGCTACCAACTTACCAACAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTGATATCATCTATGCCAGCAATTGATCTGAACCGACATAAGGATGAAATAAACTTGGCAGATCTAGCAGTAAGGAATATTCATAAAAATGCAATTGCTGAGCTGGTGGATCCTTCCCTTGGTTTTGAGTCAAATGATGATGTTAAAAGACAAATCATTGCAGTAGCAGAATTGGCTTTTCAATGCTTGCAACAGGACAAAGACTTGAGACCATCCATGGATGAAGTGTTGGAGGTGCTGAAAAGAATAGAAAGTGAAAAGGATGAAGCAGGGCATGATCAGGATGAAGAGCCATCATCACCATCTTCAGTAGATCACGATGAAGTGAAATTGTTGATGAATATGAAGTTGCCACCTTCGCCAAGGGCCGTGACAGATAAATGGAACTGTCGCTCTACCAGTCCTAATGTTAGTGGTCAATAA 1914 0.4237 MVWLLFFKSLIVFLSQLFLIVSAQNGRCPPYSDCGFLGRIRFPFTTTEQQNCGLLAIHGCQQLPPSAPKTIKLGTSTSTSYSVLRVEPRTIYISEDEQERNLRNRSCKAFSKNVNLPHTSPLASFVNKYNITIFRCNKSLKPSLSKDFHKYSNCSEFDIFYGHPNILTPPGFQWPRSLASCSTVQLPVEGSITDDPFQFVISTTAIEVQLSKECERCLGYRKGRCLLDIKGKFYCATEQRNLAWKLGVGIGMSATVIIVLLILWNRKPKCLFGFFSNRNPVSASIYFGVPVFTYKDLVIATKSFDRSRELGEGGFGIVYYGKLQDGREVAVKRLYEHNYRRVEQFMNEIKILTRLRNKNLVSLYGCTSYDSRELLLVYEYISNGTVASHLHRRESTTHASLPWLIRMKVAIETATALAYLHASDIIHRDVKTSNILLDDTFCVKVADFGLSRLFPVDVTHVSTAPQGTPGYVDPEYHRCYQLTNKSDVYSFGVVLIELISSMPAIDLNRHKDEINLADLAVRNIHKNAIAELVDPSLGFESNDDVKRQIIAVAELAFQCLQQDKDLRPSMDEVLEVLKRIESEKDEAGHDQDEEPSSPSSVDHDEVKLLMNMKLPPSPRAVTDKWNCRSTSPNVSGQ 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00004 637 FunFam Wall-associated receptor kinase-like 20 381 590 - -
Vium11899g00004 637 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vium11899g00004 637 ProSiteProfiles Protein kinase domain profile. 304 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00004 637 SMART serkin_6 304 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00004 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vium11899g00004 637 Gene3D Phosphorylase Kinase; domain 1 279 380 - -
Vium11899g00004 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 631 IPR044652 GO:0004672
Vium11899g00004 637 MobiDBLite consensus disorder prediction 623 637 - -
Vium11899g00004 637 Gene3D Transferase(Phosphotransferase) domain 1 381 605 - -
Vium11899g00004 637 MobiDBLite consensus disorder prediction 583 609 - -
Vium11899g00004 637 SUPERFAMILY Protein kinase-like (PK-like) 278 581 IPR011009 -
Vium11899g00004 637 Pfam Protein tyrosine and serine/threonine kinase 307 577 IPR001245 GO:0004672|GO:0006468
Vium11899g00004 637 MobiDBLite consensus disorder prediction 583 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00004 Vium-Chr11899 21625 25186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00004 40 636 Receptor kinase-like Gene Family AT1G25390 46.709 1.75e-169 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium11899g00004 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00004 - - gmx:100790240 847.81