Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00003 ATGTTTCCTGTTTACATGTTCATTATGGTTTTCCTTGTGTGGGTTGGGAATGGAAATGGGCACAAGGATGATTGCCCATTCTGGTTTGATTGTGGAAACCATGGGAAATTCGGTTATCCTTTCACCACGCTACAACGCCAAGATTGTGGCATATGGCCAGTCCATGGTTGTGATGATCACAACCCAAACTCAGGGCAAGGGGTAACGTTAAAGATCGGATCAAGGTGGATTAGGGTTAGAAATTTTGAGATGCAATTGAGTATTACTATACTCTACTTCGTTGATGATCATCTCAATCATCTCCTGCAATCCGATAGTTGTGAGACATTCAACCACAATATTCCACTCCCTCCTAGCTCTCCCTTAGGTTACTTCACTATCAACAACAACATAACCATTTTCAAGTGTAACCGCACTCGCCAAGTTAAGACCCCCAGAACATTCCTCAAAAATACAACCTGTGACTATGACATCTTCATGGGGCCTCCACACTCTGATGAAGTGTCTCACAACTCTCTAGCTTCCTCCTGTTCGATGGTTCAGCTTCCCGTCAATGGCTATGCAGTCTCTGCAAATCCCTTTGCATTCTTAACTGCTGACATTCCCTTGCAGTTCCATCCGTCAGATGAGTGCATGCAGTGTTTGGGTGCCATAAGCCTTTGTCACCTCGACAACCAACGAAAAGTTCATTGCGCCCCAAGGGAGGATAAAAGTCCAGCTTGGAAGCTAGGATTAATAATAGGTATAGGTGCTGGATTGTGCAATGTAATAACATTGGTGTTGATCCTCACATTACGGCGCTGTAAACATGGTGGTGCACTGGCTCTGTTCCGATCAAGAAATGGAGCCGATCCTCACGATAATCTCGACATAATGACAGATAGGATCTTCTTTGGAGTACCCGTCTTCTCTTATAAGGAGCTTCAAGAAGCAACAAACAATTTTGACCGCAACAGAAAGCTAGGGGAGGGAGGATTTGGAAGCGTTTACTATGGTAAGCTCGAAGATGGACGGGAAGTTGCAGTGAAATTGTTGTTCGAGCACAACTACAGGAGAGTGCAACAATTTATGAACGAAATTGAGATTCTCACTCACTTGCGACACAGGAACCTCGTCTCCCTCTACGGTTGCACTTCGCGTCACAGCCGTGAGTTACTGCTTGTGTACGAATACGTCCCAAACGGCACTCTTGCTTACCATCTCAACAGAAGGGACAAGCTGCTGACGTGGCCAATTCGGATGCAAATTGCGGTGGAGACCGCCACTGCCTTGGCTTATCTCCACGCTTCCGACATCATTCACCGTGACGTGAAAAGCAGCAACATTCTACTTGACACAAATTTTTTGGTTAAGGTGGCCGATTTTGGACTTTCGAGGTTGCTTCCGACCGATGCAAGCCACGTGTCAACCGGTCCGCAGGGGACTCCGGGGTACCTTGACCCTGAGTATTTCCAGCACTACCAGCTGACGGACAAGAGTGATGTATTTAGCTTTGGGGTTGTGGTTGCTGAGCTGATATCGTCGTTGCCTGCGGTCGATGCCGGCAGGGAAAGTGATGAGATAAACTTGGTGAGTCTTGCCATAAAGAAGATTCAAAATGGGAAACTCAATGAGTTGGTGTGCCAATCGCTTGGCTTTGAGTCAAATGAAGAGGTGAGAAGGATGGTGAGTTCAGTGGCGGAATTGGCCTTCCTGTGTGTACAAGGAGACAGGCAATTAAGACCTTCCATGGATGAAGTTGTGGAAGCACTGCAGAAAATTCAAGCTGGGATTGGTGAGTGCGACATGTAG 1791 0.4668 MFPVYMFIMVFLVWVGNGNGHKDDCPFWFDCGNHGKFGYPFTTLQRQDCGIWPVHGCDDHNPNSGQGVTLKIGSRWIRVRNFEMQLSITILYFVDDHLNHLLQSDSCETFNHNIPLPPSSPLGYFTINNNITIFKCNRTRQVKTPRTFLKNTTCDYDIFMGPPHSDEVSHNSLASSCSMVQLPVNGYAVSANPFAFLTADIPLQFHPSDECMQCLGAISLCHLDNQRKVHCAPREDKSPAWKLGLIIGIGAGLCNVITLVLILTLRRCKHGGALALFRSRNGADPHDNLDIMTDRIFFGVPVFSYKELQEATNNFDRNRKLGEGGFGSVYYGKLEDGREVAVKLLFEHNYRRVQQFMNEIEILTHLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTLAYHLNRRDKLLTWPIRMQIAVETATALAYLHASDIIHRDVKSSNILLDTNFLVKVADFGLSRLLPTDASHVSTGPQGTPGYLDPEYFQHYQLTDKSDVFSFGVVVAELISSLPAVDAGRESDEINLVSLAIKKIQNGKLNELVCQSLGFESNEEVRRMVSSVAELAFLCVQGDRQLRPSMDEVVEALQKIQAGIGECDM 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00003 596 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Vium11899g00003 596 SUPERFAMILY Protein kinase-like (PK-like) 297 587 IPR011009 -
Vium11899g00003 596 FunFam Wall-associated receptor kinase-like 20 392 595 - -
Vium11899g00003 596 SMART serkin_6 315 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00003 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Vium11899g00003 596 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 590 IPR044652 GO:0004672
Vium11899g00003 596 ProSiteProfiles Protein kinase domain profile. 315 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00003 596 Gene3D Phosphorylase Kinase; domain 1 292 391 - -
Vium11899g00003 596 Gene3D Transferase(Phosphotransferase) domain 1 392 592 - -
Vium11899g00003 596 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 295 391 - -
Vium11899g00003 596 Pfam Protein tyrosine and serine/threonine kinase 318 584 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00003 Vium-Chr11899 17894 20145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00003 29 594 Receptor kinase-like Gene Family AT1G25390 45.486 6.25e-152 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium11899g00003 PK_Tyr_Ser-Thr 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00003 - - gmx:100789695 892.878