Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11899g00002 ATGGTTGTGGTGCTTCTATTGTATCATACGAAAATGTATGATGTTTATGTAATACTTTTGTTTTGTCATCTGACAGTGTTGCTTCTCGCAGCCGGAAATGCAAATGGGCACAGTTCTGACTGTCCGGACTCATTTGATTGTGGAAGTTTGGGAAGGTTTTCCTTTCCCTTCACCACCTTTGAATACCGCAATTGTGGTGCTTTGGCAATCCAAGGCTGTAATAATCCTAACAAGACAGCACTGAAGCAAGTCCAGTTGACCAATGGTGGAAAACTTTTACAAGTTACAAACATTGTTGGTTGGAGACGGAAGACTGAAGTTACCATTAAAGATAAGGACTTCCTCAATCTTCTTGAAAGTTCTAATTGTAATGCCTTGAGCTATAATATCATCTTCCCTCCCTCCTCCCCTTTCGGTTCTTTTTACCTGAAAAACAATATAACCGCCTTCAATTGCAGCCGCCAGGAAAACCGCAATATTTCAAAAGATTTCGTCAACTATAGATGTCTTTCCTTTGATTTTTACTTTGCCCCTTCATCCTCTGATCAGGACCACCTTCGCTCTTTAACCTCCTCATGTTCAATGGTTCAACTTCCCGTCAGACAAGATTCCCAGTTCTTCAGAGACCCATTTGGATTTTTAACTCCTGAAATTACCTTTCAATTCCAGTTTTCAAATGACTGTTGGCGGTGTCAGGGAAGTGGGGGCAATTGCCGAATAGACAGCAACGCAAAATTATACTGCGCCATGAGGAAAAGTAGAGTTTCGACTCGGAAGCTCGCATTGATGCTAGGAATCGGTCTTGGACCATGGGTCATATTTGGGTTGTTCTTCACGTTACGCTACTGCAAACAGAAGTATGCTCAATCGAGAAACACTTATGGTGATTCCTTCCAAAATCCAGACACAGAGATTGACATGATCTTCTTTGGGGTACCCATCTTTTCGTATAAGGAGCTTCAAGAAGCAACCAACAATTTTGACTCCACTAGAAAGCTCGGAGATGGAGGCTTTGGCATTGTTTACCACGGGACACTGAGAGATGGAAGGGAAGTTGCAATCAAACATCTATTTGAGCACAATTACAAGAGAGTGGAACAGTTTATGAATGAAATTGAGATCCTTTCTCGCTTGCGCCACAGAAATCTCGTGTCCCTTTATGGCTGCACTTCACGTCACGCCCAAGAGCTGTTGCTTGTGTATGAGTACATTCCAAACGGCACAGTTGCTAGCCATCTCCACGGTGAATTAGCAAGAGTTGGTTTGCTGACATGGCCCATTCGAATGCAAATTGCCATGGACACTGCTACTGCACTCTCCTATCTCCATTCTTCTAACATCATTCACCGTGATGTGAAAACCAATAACGTTCTGCTTGACATTAATTTTTCCGTTAAGGTGGCAGATTTTGGGCTTTCAAGATTGTTTCCCAATGATGTTAGTCACGTGTCCACAGCTCCGCAGGGATCTCCGGGGTATCTTGATCCTGAATATTTTCAATGTTACAGGCTCACCGATAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTAATGGAGCTAATATCATCCATGCCAGCAGTTGATGCAGCCAGGGAAAGGGACGAAGTTAACTTAGTAAATTTTTTCATGACAAAGATTCAAAAAGGAAAGCTTCGTGAGCTTGTAGACCCATCCTTTGGATTTGAGTCAGATGAAGTCGTTAAAAGGATGGTGACTTCAGTGGCAGAATTGGCCTTTCGGTGTGTGCAGGGAGACAACGAAATGAGGCCTTCTATGGACCAAGTTCTGGAATTCCTCAAGAAAATCCAAAGTGGGAATTATGAGTCTGAGAATCCAGAAAAAGGAGATCATGGTGGTAATGTTATGTCGTCTACCTCAAGGGAAGAAGAGCAACCACCACCAACAGTTTCACGGAATTCGGGTCAAATTGAAATTTTAATGAATAATAAGCTTTCTTCGCCAAGGTCCTACACCGAGAAATGGGAAAGTGAATCTACAACGCCCAATGTCAGTGGTTAA 2019 0.4279 MVVVLLLYHTKMYDVYVILLFCHLTVLLLAAGNANGHSSDCPDSFDCGSLGRFSFPFTTFEYRNCGALAIQGCNNPNKTALKQVQLTNGGKLLQVTNIVGWRRKTEVTIKDKDFLNLLESSNCNALSYNIIFPPSSPFGSFYLKNNITAFNCSRQENRNISKDFVNYRCLSFDFYFAPSSSDQDHLRSLTSSCSMVQLPVRQDSQFFRDPFGFLTPEITFQFQFSNDCWRCQGSGGNCRIDSNAKLYCAMRKSRVSTRKLALMLGIGLGPWVIFGLFFTLRYCKQKYAQSRNTYGDSFQNPDTEIDMIFFGVPIFSYKELQEATNNFDSTRKLGDGGFGIVYHGTLRDGREVAIKHLFEHNYKRVEQFMNEIEILSRLRHRNLVSLYGCTSRHAQELLLVYEYIPNGTVASHLHGELARVGLLTWPIRMQIAMDTATALSYLHSSNIIHRDVKTNNVLLDINFSVKVADFGLSRLFPNDVSHVSTAPQGSPGYLDPEYFQCYRLTDKSDVYSFGVVLMELISSMPAVDAARERDEVNLVNFFMTKIQKGKLRELVDPSFGFESDEVVKRMVTSVAELAFRCVQGDNEMRPSMDQVLEFLKKIQSGNYESENPEKGDHGGNVMSSTSREEEQPPPTVSRNSGQIEILMNNKLSSPRSYTEKWESESTTPNVSG 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11899g00002 672 FunFam Wall-associated receptor kinase-like 20 404 612 - -
Vium11899g00002 672 SUPERFAMILY Protein kinase-like (PK-like) 311 612 IPR011009 -
Vium11899g00002 672 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00002 672 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 666 IPR044652 GO:0004672
Vium11899g00002 672 Gene3D Phosphorylase Kinase; domain 1 299 403 - -
Vium11899g00002 672 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11899g00002 672 FunFam receptor-like protein kinase FERONIA 292 403 - -
Vium11899g00002 672 Gene3D Transferase(Phosphotransferase) domain 1 404 613 - -
Vium11899g00002 672 CDD STKc_IRAK 333 602 - -
Vium11899g00002 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vium11899g00002 672 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vium11899g00002 672 MobiDBLite consensus disorder prediction 606 672 - -
Vium11899g00002 672 Pfam Protein tyrosine and serine/threonine kinase 330 599 IPR001245 GO:0004672|GO:0006468
Vium11899g00002 672 MobiDBLite consensus disorder prediction 618 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11899g00002 Vium-Chr11899 9943 13505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11899g00002 30 672 Receptor kinase-like Gene Family AT1G25390 44.360 1.75e-163 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium11899g00002 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11899g00002 - - gmx:100778085 968.378