Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11890g00002 ATGAGAAAACCCACTAAACCCAACCCCACCTTCAACCCATTCTCAATCCTCAGATCCACCCTCCTCCTCCTCCTCCTCCTCTCCATGGCCTCCATCTTCTTCCTCTCCCTCTTCTTCTTCCTCAACCTCCACCCTCACTCCTCCGCCGTGGAGATTAACCGCGCCTGCAATGCAACGCGCTTCCCTCTCCAATGCCAAGCCTCTCTCGTCCCCAATCTCCTTACCAACCCCACCCCTCTCCAAATCATCCAATTCACCATCAGAGCCTCTTCCTCCAATCTCGTCACCGCGCGATCCATGCTGCACACCATCCGCGACGCCTCCCGAAACAACCGTACCCGCACTACCAACGTCAAAAACTGTCTCCGTGTCCTCCATTACTCCCGCTACCGCAACTACCTCGCCGCCGTCGCACTCCGCCGTGGCGCCACCAAGGATGCGCGCGCCTGGATGAGCGCCTCCCTCGGCTACCAGTACGGCTGCTGGAACGGCCTCAAGTACATCAACCACACGGCGCAGGTCGCCGAAACGATGACGTTCCTTAACTCTCTCGTCAACATTTCCAGCAACGCTCTCAGCATGATGGTCTCCTACGACCTCTTCGGAAACGACACAGCATTGTGGAGGCCGCCGATGACCGAGCGCGACGGCTTCTGGGAACCGTCCGGGACTCAGGGACTCGGGGCGGGACCCAAGATACCGGAGAAATTGACGTCGGACGCTGTGGTGTGTAAGGGTGGGGGGTGTTACCAGACGGTGCAGGAAGCGGTTAACGCTGCGCCGAATCATTCGGAAGAGAGATTTGTGATTTATATAAAGGAAGGGGTTTATGAGGAGAAGGTGAGGATTCCATTGAGGAAAAGGAATGTGGTGTTCTTGGGGGATGGCATGGGTAAGACGGTGATCACGGGATCTGCTAACGTGGGCCAGCTCGGTGTCACCACCTACAGCTCTGCCACCGTGGGGGTTGCGGGGGATGGATTTATGGCAAAGGATCTCACGATTCAGAACACGGCTGGTGCTGATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAACTGTGAATTCATAGGCAACCAGGATACTCTCTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGCATACAAGGCAACGTGGACTTCATCTTTGGGAACTCGGCAGCAATCTTCCAAGACTGTGAAATCCTAGTACGGCCTCGCCAAGGCAGACCAGAAAAGGGTGAGAACAATGCTGTTACTGCACAAGGTAGGACAGACCCTGCTCAGTCAACAGGATTTGTTTTCCAGAACTGTTTGGTTAATGGTACGGAGGAATACATGGCATTGTATTATAGCAAACCTACAGCTCACATAAACTATCTGGGGAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATCCATACATTCTTGGAAGCCCTTATCACACCAGAGGGATGGATGCCATGGACTGGGGATTTTGCTCTGAAAACGCTTTATTATGGGGAATTTGAGAACTCAGGACCCGGTTCTAATCTGAGTAAGAGGGTGCCTTGGAGTAACCAGGTCCCATCGGAGCACGTGTTCTCATATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGAATAATCATTTCAGTCTTTAG 1653 0.5275 MRKPTKPNPTFNPFSILRSTLLLLLLLSMASIFFLSLFFFLNLHPHSSAVEINRACNATRFPLQCQASLVPNLLTNPTPLQIIQFTIRASSSNLVTARSMLHTIRDASRNNRTRTTNVKNCLRVLHYSRYRNYLAAVALRRGATKDARAWMSASLGYQYGCWNGLKYINHTAQVAETMTFLNSLVNISSNALSMMVSYDLFGNDTALWRPPMTERDGFWEPSGTQGLGAGPKIPEKLTSDAVVCKGGGCYQTVQEAVNAAPNHSEERFVIYIKEGVYEEKVRIPLRKRNVVFLGDGMGKTVITGSANVGQLGVTTYSSATVGVAGDGFMAKDLTIQNTAGADAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAIFQDCEILVRPRQGRPEKGENNAVTAQGRTDPAQSTGFVFQNCLVNGTEEYMALYYSKPTAHINYLGRPWKEYSRTVFIHTFLEALITPEGWMPWTGDFALKTLYYGEFENSGPGSNLSKRVPWSNQVPSEHVFSYSVQSFIQGDDWNNHFSL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11890g00002 550 Gene3D - 235 549 IPR012334 -
Vium11890g00002 550 Pfam Pectinesterase 241 542 IPR000070 GO:0030599|GO:0042545
Vium11890g00002 550 SMART PMEI_2 47 194 IPR006501 GO:0004857
Vium11890g00002 550 FunFam Probable pectinesterase/pectinesterase inhibitor 51 50 197 - -
Vium11890g00002 550 CDD PMEI-like_3 55 195 - -
Vium11890g00002 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 194 IPR035513 -
Vium11890g00002 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 197 IPR035513 -
Vium11890g00002 550 SUPERFAMILY Pectin lyase-like 241 547 IPR011050 -
Vium11890g00002 550 FunFam Pectinesterase 234 550 - -
Vium11890g00002 550 PANTHER PECTINESTERASE 32 544 - -
Vium11890g00002 550 NCBIfam pectinesterase inhibitor domain 30 194 IPR006501 GO:0004857
Vium11890g00002 550 Pfam Plant invertase/pectin methylesterase inhibitor 52 194 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11890g00002 Vium-Chr11890 16719 19563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11890g00002 43 544 Carbohydrate Esterase AT5G09760 63.938 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11890g00002 - - gmx:100802102 855.899