Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1187g00003 ATGAGAAAGGGAGTAGTAGTAGTAGGAAGCAACACAGACATGAGAAGCTCAGCGTCTTACACGCTACTGTTGTTTCTTTTCGTATGGTTCCGCCTGGCCGAGTGTTCTTCTTTCAGTGACATGGATGCGCTGCTGAAGATGAAGGACTCCATGAAGGGACACAAAGCCAAAGAAGATGCGCTCAGCGACTGGAAGTTTTCCACCTCGCTTTCCGCACACTGTTCATTTTCTGGCGTCCAATGCGACCAAGACCTTCGAGTCGTTGCCATCAACGTCTCGTCCCTTCCACTCTTCGGCCACCTTCCGCCGGAGATTGGACAGTTTGACAAACTCCAAAACCTAACCATCTCGCAGGACAACCTCACCGGCGAGCTTCCCAAGGAGCTCGCTGCCCTCGCTTCCCTCAAGCTCCTCAACATCTCCCACAACAGCTTCTCCGGTGGTTTCCCCGGCCAAATCGTTCTTCCCATGACCCAACTCGAGGTCCTCGACGCCTACGACAACAACTTCACCGGACCGCTTCCGGAGGAATTCGTGAAACTGGAGAAACTCCGATACCTCAAGCTCGATGGAAATTACTTTTCCGGCAGCATACCGGAGAGATACTCGGAGTTTGGGTGCTTGGAGTTTTTAAGCTTAAGCACTAACAGTCTGTCGGGGAAGATTCCCAAGAGTTTGTCTCGGTTGAAGACGCTGAAGTTTCTAAAACTTGGATACAACAACGCTTACGAAGGTGGGATCCCACCGGAGTTCGGAGCCATGAAATCACTGAAATACCTTGACCTCTCCAGCTGCAACCTCAGCGGAGAGATTCCACCGAGCCTGAGCAGTTTAAAGAACCTTGACACGTTGTTCTTGCAAATGAACAACCTCACAGGAACTATTCCTTCGGAACTCTCTGCCATGGAGAGCCTCATGTCAATGGATCTCTCCTTCAACGGTCTCACCGGAGAGATTCCTGAGAGTTTCTCCCAGCTGAGAAACCTAACTCTGATGAACTTCTTCCACAACAAGCTGCGTGGTTCTGTTCCCCTCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGAGAACAACTTGTCCTTCGTGCTGCCCCAGAATCTTGGCCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAGCAATCACTTCACCGGGTTGATCCCTCCGGGTCTGTGCAAGAGTGGGATGTTACAAACCTTCGTCATCACCGATAACTTCTTCCACGGTCCAATCCCCGATGACATTGGAAACTGCAAGTCACTCGTCAAGATCAGAGCCTCCAATAACTACCTTAGCGGCGCCATTCCGTCGGGAATTTTCAAACTGCCTTCCGTCAAAATAATCGAGCTCGCCAACAACCGTTTCGACGGCGAACTACCTCCCGAGATTTCCGGCGATTCTCTCGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTCAACCGGCCTTGAAGAACTTGAGGGCACTGCAGACACTCTCACTCGACGCCAACGAGTTCGTTGGAGAAATCCCGGCGGAGGTTTTTGTCTTACCGATACTGACCTCCGTCAACATAAGCGGCAACAATCTCACGGGAGAAATCCCCACGACGTTGATTCACTGCGTTTCACTCAACTTCGTTGACCTCAGTCGGAACATGCTGGTGGGGGAGATTCCCAAGGGCATAAAAAACCTGACGAGCTTGAGCGTTTTAAATGTTTCTCAAAACCTGCTAACAGGACCAATCCCCGACGAGATTCGCTTCATGTCTAGCCTCACAACGCTGGATCTCTCCTACAACAATTTCAACGGCAAGCTCCCAACCGGCGGTCAGTTTTTGGCCTTCAGCGACAGGTCCTTCGCGGGGAACCCCAATCTCTGTTCCTCCCGCTCTTGCACCAGTTCCTCCATGTACCCAGACGACGCCTTCCAGAAAAGGCGAGGCTCATGGAGTTCGAAATCGACGAGGGTGATAATAAGCGTGATTGCACTAGCCACCGCAGCGCTGCTGGTGGCAGTGACGGTGTACATGATGCGAAGGAGGAAGCTGCTCCGGGCGATGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTGAAAGCGGAGGACGTGGTGGAGTGTCTGAAGGAGGAGAACATAATAGGAAAAGGAGGCGCGGGGATCGTGTACCGGGGGTCTATGCCGAACGGAAGCGACGTGGCCATAAAGCGGTTGGTCGGGGCGGGTAGCGGGAGGAACGATTACGGGTTCAGGGCGGAGATAACGACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTGCTCTACGAGTACATGCCGAATGGAAGCTTAGGGGAATGGCTGCATGGAGCGAAAGGAGGGCATTTAAGATGGGAGATGAGGTTCAAGATTGCAGTTGAAGCTGCAAGAGGACTCTGTTACTTGCACCATGATTGTTCTCCTCTCATCATTCACAGAGACGTCAAATCCAACAATATATTGCTCGACGCCGACTTCGAGGCCCATGTCGCCGATTTCGGACTCGCCAAGTTCCTCCACGATCCTGGCGCCTCTCAGTCCATGTCCTCCATCGCCGGCTCCTACGGCTACATTGCTCCAGAGTATGCATACACGTTGAAAGTGGACGAGAAAAGCGATGTGTACAGTTTCGGGGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCGGTGGGGGAGTTTGGAGACGGAGTGGACATCGTTGGATGGGTGAACAAGACGAGAATGGAGATATCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGATCCAAGGCTGAGTGGGTATCCATTGACAAGTGTCGTTTACATGTTCAACATTGCTATGATGTGTGTTAGGGAAATGGGCCCCGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACCAATCCTCCTCGCTCCACCACTCACTCACACTCACAGCCTCATTAA 2997 0.5249 MRKGVVVVGSNTDMRSSASYTLLLFLFVWFRLAECSSFSDMDALLKMKDSMKGHKAKEDALSDWKFSTSLSAHCSFSGVQCDQDLRVVAINVSSLPLFGHLPPEIGQFDKLQNLTISQDNLTGELPKELAALASLKLLNISHNSFSGGFPGQIVLPMTQLEVLDAYDNNFTGPLPEEFVKLEKLRYLKLDGNYFSGSIPERYSEFGCLEFLSLSTNSLSGKIPKSLSRLKTLKFLKLGYNNAYEGGIPPEFGAMKSLKYLDLSSCNLSGEIPPSLSSLKNLDTLFLQMNNLTGTIPSELSAMESLMSMDLSFNGLTGEIPESFSQLRNLTLMNFFHNKLRGSVPLFVGELPNLETLQLWENNLSFVLPQNLGQNGKFKFFDVTSNHFTGLIPPGLCKSGMLQTFVITDNFFHGPIPDDIGNCKSLVKIRASNNYLSGAIPSGIFKLPSVKIIELANNRFDGELPPEISGDSLGILTLSNNLLTGRIQPALKNLRALQTLSLDANEFVGEIPAEVFVLPILTSVNISGNNLTGEIPTTLIHCVSLNFVDLSRNMLVGEIPKGIKNLTSLSVLNVSQNLLTGPIPDEIRFMSSLTTLDLSYNNFNGKLPTGGQFLAFSDRSFAGNPNLCSSRSCTSSSMYPDDAFQKRRGSWSSKSTRVIISVIALATAALLVAVTVYMMRRRKLLRAMTWKLTAFQRLNLKAEDVVECLKEENIIGKGGAGIVYRGSMPNGSDVAIKRLVGAGSGRNDYGFRAEITTLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRMEISQPSDAALVLAVVDPRLSGYPLTSVVYMFNIAMMCVREMGPARPTMREVVHMLTNPPRSTTHSHSQPH 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1187g00003 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 677 784 - -
Vium1187g00003 998 Gene3D Ribonuclease Inhibitor 243 345 IPR032675 -
Vium1187g00003 998 PANTHER RECEPTOR-LIKE PROTEIN 55 367 987 - -
Vium1187g00003 998 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Vium1187g00003 998 Pfam Leucine Rich repeat 590 604 IPR001611 GO:0005515
Vium1187g00003 998 ProSiteProfiles Protein kinase domain profile. 708 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1187g00003 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 785 998 - -
Vium1187g00003 998 Gene3D Ribonuclease Inhibitor 346 638 IPR032675 -
Vium1187g00003 998 Pfam Leucine Rich Repeat 256 278 IPR001611 GO:0005515
Vium1187g00003 998 Gene3D Transferase(Phosphotransferase) domain 1 785 996 - -
Vium1187g00003 998 SMART serkin_6 708 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1187g00003 998 Gene3D Ribonuclease Inhibitor 39 154 IPR032675 -
Vium1187g00003 998 Gene3D Ribonuclease Inhibitor 155 242 IPR032675 -
Vium1187g00003 998 Pfam Protein tyrosine and serine/threonine kinase 709 982 IPR001245 GO:0004672|GO:0006468
Vium1187g00003 998 SUPERFAMILY L domain-like 381 628 - -
Vium1187g00003 998 FunFam Leucine-rich repeat receptor-like protein kinase 37 200 - -
Vium1187g00003 998 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 242 346 - -
Vium1187g00003 998 SUPERFAMILY Protein kinase-like (PK-like) 698 983 IPR011009 -
Vium1187g00003 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Vium1187g00003 998 Pfam Leucine rich repeat N-terminal domain 39 82 IPR013210 -
Vium1187g00003 998 Gene3D Phosphorylase Kinase; domain 1 674 784 - -
Vium1187g00003 998 SUPERFAMILY RNI-like 90 412 - -
Vium1187g00003 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 347 638 - -
Vium1187g00003 998 SMART LRR_typ_2 254 278 IPR003591 -
Vium1187g00003 998 SMART LRR_typ_2 446 470 IPR003591 -
Vium1187g00003 998 SMART LRR_typ_2 493 517 IPR003591 -
Vium1187g00003 998 SMART LRR_typ_2 350 374 IPR003591 -
Vium1187g00003 998 SMART LRR_typ_2 302 326 IPR003591 -
Vium1187g00003 998 SMART LRR_typ_2 565 588 IPR003591 -
Vium1187g00003 998 SMART LRR_typ_2 589 622 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1187g00003 Vium-Chr1187 13716 17906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1187g00003 35 992 Receptor kinase-like Gene Family AT1G75820 60.897 0.0 1186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1187g00003 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1187g00003 - - gmx:732625 1629.77