Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1186g00005 ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACACCACCTTCCCGTTTTGGCTTCAACCCTGCTGGAATCTCAAGCACTGATGTTGCAGGAAACTGTTTTGATCTCACTTCTGATTCAACTCCTCATCTACTCAATCTTCCTTCTTATGGCATATATGAAGCATTTCACAGAAACAATGACATTCACAACACCCCTCAAGATTGGAAAGAGAACTACAACAGTCAGAACTTGCTGTTAGGAACTTCATGCAGTGACCAAAACATGAACAACAATCAACAACAACAACAGCAACCAAAGCTTGAAAACTTTCTGGGAGGACATTCTTTTGGAGAACATGACCAAACCTACGGCGGTAACTCAGCCTCAACAGATTACATGTTTCCGAGTCAGCCAGTGGCCACCAGTGGCGGCAGTAGCACAGGCAATAGTAACTCCATAGGGTTATCCATGATAAAGACATGGCTGAGGAACCAACCGCCACCGTCAGAAAACAACAACAATGAAAGTGGTGGGAACAGTGGAAGCAGTGTGCAGACTCTCTCACTTTCTATGAGTACTGGTTCACAATCCAACACTTCACTTCCTGTTCTCTCTGCAAATGTGGAAAATGGAGAGAGTTCTTCAGATAACAAACAACCACCAACCACTGCTGCACTTGATACCATCCCAACAGGAGCCACTGAATCTGCACCCAGAAAGTCCATTGACACGTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACTGGAAGATACGAGGCTCATCTATGGGATAATAGCTGCAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGTTTACTTGGGAGGCTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACCACAACAACAAATTTTCCAATTAGCCACTATGAGAAAGAGGTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGACACCATCAACATGGTAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGCAACAAGGATCTTTACTTGGGAACATTCAGCACTCAAGAAGAAGCAGCAGAGGCTTATGATGTTGCGGCCATAAAATTCCGAGGACTGAGTGCTGTTACAAACTTCGACATGAGCAGATACGATGTGAAGAGCATACTTGAGAGCACTACCTTGCCGATTGGTGGTGCCGCCAAGCGTTTGAAGGACATGGAACAGGTGGAACTGAACGTGGAAGCTCATAGAACAGACCAAGAAGATCACAGCAGCATCTTGAACTCTCACCTTACTCAAGGTATCAGTAACAACTATGCAGGAGGAACAGCAACAGCTCATCATAACTGGCACAACGGTCTTTCATTCCACCAACCTCAGCCTTGCACCACCATGCACTACCCTTATGGACAGAGACTATGGTGCAAGCAAGAACAGCACGACAATTCTGATACCTCTCATCCTTTGTCTTATCCTGAGATTCATCAACTACAGCTAGGGAATAACGGCACACACAACTTTTTCCACGCAAATTCCGGCTTGCACCCTATCATGAACATGGATTCTGCTTCCATTGACAATAGCTCTTCGTCTAACTCGGTGGTTTATGATGGTTATGGAGCTGGTGGGGGCTATCTGATACCTATTGGGACTGGTACTGTTGTTGCAAGTGACGGTGATCATAGTAATATAAGAGGAAGTAATGGTTTTGGTGATAATGAGATGAAGGTACTTGGTTATGAAGGTCTTTATGGATCGAATGATGCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCCCAACATCAATCAGCTTCTGTAGATGCAGTGAAGGGTAGTGCATACGATCAAGGCTCTGCATGCAACACTTGGGTTCCAACTGCAATTCCAACTCTTGCACCTAGGTCTACCAGCATGACTCTCTGCCATGGTGTTCCACCCTTCTCGTTATTGCATGAATAG 2082 0.45 MGSMNLLGFSLSPQEHPSSQDHSQTPPSRFGFNPAGISSTDVAGNCFDLTSDSTPHLLNLPSYGIYEAFHRNNDIHNTPQDWKENYNSQNLLLGTSCSDQNMNNNQQQQQQPKLENFLGGHSFGEHDQTYGGNSASTDYMFPSQPVATSGGSSTGNSNSIGLSMIKTWLRNQPPPSENNNNESGGNSGSSVQTLSLSMSTGSQSNTSLPVLSANVENGESSSDNKQPPTTAALDTIPTGATESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVEAHRTDQEDHSSILNSHLTQGISNNYAGGTATAHHNWHNGLSFHQPQPCTTMHYPYGQRLWCKQEQHDNSDTSHPLSYPEIHQLQLGNNGTHNFFHANSGLHPIMNMDSASIDNSSSSNSVVYDGYGAGGGYLIPIGTGTVVASDGDHSNIRGSNGFGDNEMKVLGYEGLYGSNDAYHAHARNLYYLSQHQSASVDAVKGSAYDQGSACNTWVPTAIPTLAPRSTSMTLCHGVPPFSLLHE 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1186g00005 693 PRINTS Ethylene responsive element binding protein signature 259 270 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 PRINTS Ethylene responsive element binding protein signature 400 420 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 ProSiteProfiles AP2/ERF domain profile. 258 324 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 MobiDBLite consensus disorder prediction 117 251 - -
Vium1186g00005 693 ProSiteProfiles AP2/ERF domain profile. 360 418 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 FunFam AP2-like ethylene-responsive transcription factor 359 420 - -
Vium1186g00005 693 SMART rav1_2 258 330 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 SMART rav1_2 360 424 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 Pfam AP2 domain 360 410 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 Pfam AP2 domain 258 316 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 CDD AP2 257 326 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 SUPERFAMILY DNA-binding domain 359 420 IPR016177 GO:0003677
Vium1186g00005 693 CDD AP2 359 420 IPR001471 GO:0003700|GO:0006355
Vium1186g00005 693 MobiDBLite consensus disorder prediction 127 251 - -
Vium1186g00005 693 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 507 - -
Vium1186g00005 693 Gene3D AP2/ERF domain 360 420 IPR036955 GO:0003700|GO:0006355
Vium1186g00005 693 Gene3D AP2/ERF domain 258 326 IPR036955 GO:0003700|GO:0006355
Vium1186g00005 693 SUPERFAMILY DNA-binding domain 257 326 IPR016177 GO:0003677
Vium1186g00005 693 FunFam AP2-like ethylene-responsive transcription factor ANT 257 326 - -
Vium1186g00005 693 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1186g00005 Vium-Chr1186 34941 39470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1186g00005 112 445 AP2-EREBP Transcription Factor Family AT5G17430 64.970 4.11e-138 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium1186g00005 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1186g00005 K09285 - gmx:100797584 1124