Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11842g00002 ATGAAAAGGAGGAACATAGCCCACAGGTTAGAAGAAGGTTCTCAAGTTTTACAGAGATTAACAATGGATGTGTCCAAGTTACATAACTCTGATGAAGAAGACAAGAAAGAAGACGAAGTTGTGCTTCCCGGCTTCAGATTCCATCCAACAGACGAAGAGCTTGTGGGCTTTTATCTCAGGCGAAAGGTGGAGAAGAAGCCTCTCAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAGGCAAGTTCTGTGGGGGAGAAGGAGTGGTATTTCTTCTGCATAAGAGGGAGAAAGTACAGAAACAGCATAAGGCCTAACAGAGTGACAGGGTCTGGGTTTTGGAAAGCCACCGGGATTGATAAACCGATATACTGTGTTAAAGAACCCCATGAATGCATTGGGTTGAAGAAATCATTGGTTTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAATGGAAAATCCACCACTAACCCACAACCTAATGACATTCAAGAAGCTGAAGTGTGGACGCTATGTCGAATATTCAAACGAGTCCCATCTTACAAGAGGTACACACCAAATTTGAAAGACTCAAACACAGCACCAATCACGAAGCCAAACCCCACAAACTCTTCAAGTTCCAAAACATGCAGTTTAGAATCTGACACCGCCAAGCCATGCTTGACTTTCACAAACTCACCATCATCACTGCTCCTTCCCCAAAACCAAATGATCAAACCAGTTTTTGGACATGTTGACCAACAGCCTCCCACATCCTTTTCCTACTCGAGTTTTTGGAACCATCAGAATCTGGAATTGGCTCATGAGAATTGGGATGATCTCACTTCTGTCGTTCAGTTTGCTGTTGATCCATCCAGGCTTTCTGATCACTGTAAAGAGTTTAATAGATTTTGA 957 0.4284 MKRRNIAHRLEEGSQVLQRLTMDVSKLHNSDEEDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSTTNPQPNDIQEAEVWTLCRIFKRVPSYKRYTPNLKDSNTAPITKPNPTNSSSSKTCSLESDTAKPCLTFTNSPSSLLLPQNQMIKPVFGHVDQQPPTSFSYSSFWNHQNLELAHENWDDLTSVVQFAVDPSRLSDHCKEFNRF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11842g00002 318 Gene3D NAC domain 50 201 IPR036093 GO:0003677|GO:0006355
Vium11842g00002 318 MobiDBLite consensus disorder prediction 207 231 - -
Vium11842g00002 318 ProSiteProfiles NAC domain profile. 41 198 IPR003441 GO:0003677|GO:0006355
Vium11842g00002 318 Pfam No apical meristem (NAM) protein 43 169 IPR003441 GO:0003677|GO:0006355
Vium11842g00002 318 SUPERFAMILY NAC domain 40 197 IPR036093 GO:0003677|GO:0006355
Vium11842g00002 318 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 257 - -
Vium11842g00002 318 FunFam NAC domain-containing protein 35 50 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11842g00002 Vium-Chr11842 9417 11865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11842g00002 31 199 NAC Transcription Factor Family AT5G39820 59.893 2.28e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium11842g00002 NAM 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11842g00002 - - gmx:100784323 499.59