Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11837g00004 ATGGAGAACAAAAGAATGGCAGTTAACGGGAAACGCAGCCCCAGAAGCCAAAAGATCCCATTAGCAGATTCCAATGTCCAAAACATGGCGACCCTTTTATCCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGTTAGAGATTCCAAGCACAAGAAACGCTCTCTTTTGAATTCCAGTTCTCCATCCACCAACTCATCAAGGATACGTAGAACTTGGAGGACTTCACAACAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAGGAAAGTGGGAGAAAGAAGAAGGAAGAAAGGGCTGGTGTTAATAACGAGGGAAGAAAAGGAGGAGGAGGGGATGGGAATGAATCGAAAGAGAAGAACCCGGGTGCCCCTTCTTCTAGTTCTGCTTTACCCTGCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGATAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGCACGGTAAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAGGCAAGAGAAGCAGCCCGCTCCTTGAATAGTCGCCAACAAGCTCAAAATCTGAGTCCTCAAACAGCATTTTATGCTAACCTAAGGAATACAAGCATACAACCTTCTGGTGGGGCATCAAGCAGAAACAATTCAAGGAAGAGTGTGGCAGTCACATCAACAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATTGTTGAACAAAGCCCGGGAACAACTCGAATGAGAACAAGAAGAGGGGTTCCTACTAGCCAAGATCAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATCCAAACCTTTAGGGGGAGCAGCCAGGAACAGACTATTAGGCTACCTTCACCGTCTTTTGCAAGAGCAAATTTGAGGGCTATGGCCTCAAGAGCCATGAATCCTAGGACTCGTGACAGAAGAAGATAA 1140 0.4605 MENKRMAVNGKRSPRSQKIPLADSNVQNMATLLSPRFKSAAAMAGWDEEALLLASLIVEDTPVRDSKHKKRSLLNSSSPSTNSSRIRRTWRTSQQPIPVILDLDAEETPKKESGRKKKEERAGVNNEGRKGGGGDGNESKEKNPGAPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEAREAARSLNSRQQAQNLSPQTAFYANLRNTSIQPSGGASSRNNSRKSVAVTSTTQEDEDAALARRLQREIVEQSPGTTRMRTRRGVPTSQDQDAALALRLQREEFIQTFRGSSQEQTIRLPSPSFARANLRAMASRAMNPRTRDRRR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11837g00004 379 SUPERFAMILY RING/U-box 157 228 - -
Vium11837g00004 379 PANTHER UNCHARACTERIZED 321 371 - -
Vium11837g00004 379 SMART ring_2 165 203 IPR001841 -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 73 96 - -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 63 151 - -
Vium11837g00004 379 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 303 321 - -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 262 289 - -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 104 126 - -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 1 23 - -
Vium11837g00004 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 234 IPR013083 -
Vium11837g00004 379 Pfam Zinc finger, C3HC4 type (RING finger) 165 203 IPR018957 GO:0046872
Vium11837g00004 379 ProSiteProfiles Zinc finger RING-type profile. 165 204 IPR001841 -
Vium11837g00004 379 MobiDBLite consensus disorder prediction 262 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11837g00004 Vium-Chr11837 21824 24074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11837g00004 131 207 C2H2 Transcription Factor Family AT5G39550 37.179 6.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11837g00004 - - gmx:102666585 509.22