Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11837g00003 ATGGAGAACAAAAGAATGGCAGTTAACGGGAAACGCAGCCCCAGAAGCCAAAAGATCCCATTAGCAGATTCCAATGTCCAAAACATGGCGACCCTTTTATCCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGTTAGAGATTCCAAGCACAAGAAACGCTCTCTTTTGAATTCCAGTTCTCCATCCACCAACTCATCAAGAACTTGGAGGACTTCACAACAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAGGAAAGTGGGAGAAAGAAGAAGGAAGAAAGGGCTGGTGTTAATAACGAGGGAAGAAAAGGAGGAGGAGGGGATGGGAATGAATCGAAAGAGAAGAACCCGGGTGCCCCTTCTTCTAGTTCTGCTTTACCCTGCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGATAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGCACGGTAAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAGGCAAGAGAAGCAGCCCGCTCCTTGAATAGTCGCCAACAAGCTCAAAATCTGAGTCCTCAAACAGCATTTTATGCTAACCTAAGGAATACAAGCATACAACCTTCTGGTGGGGCATCAAGCAGAAACAATTCAAGGAAGAGTGTGGCAGTCACATCAACAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATTGTTGAACAAAGCCCGGGAACAACTCGAATGAGAACAAGAAGAGGGGTTCCTACTAGCCAAGATCAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATCCAAACCTTTAGGGGGAGCAGCCAGGAACAGACTATTAGGCTACCTTCACCGTCTTTTGCAAGAGCAAATTTGAGGGCTATGGCCTCAAGAGCCATGAATCCTAGGACTCGTGACAGAAGAAGATAA 1131 0.4607 MENKRMAVNGKRSPRSQKIPLADSNVQNMATLLSPRFKSAAAMAGWDEEALLLASLIVEDTPVRDSKHKKRSLLNSSSPSTNSSRTWRTSQQPIPVILDLDAEETPKKESGRKKKEERAGVNNEGRKGGGGDGNESKEKNPGAPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEAREAARSLNSRQQAQNLSPQTAFYANLRNTSIQPSGGASSRNNSRKSVAVTSTTQEDEDAALARRLQREIVEQSPGTTRMRTRRGVPTSQDQDAALALRLQREEFIQTFRGSSQEQTIRLPSPSFARANLRAMASRAMNPRTRDRRR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11837g00003 376 MobiDBLite consensus disorder prediction 259 286 - -
Vium11837g00003 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 231 IPR013083 -
Vium11837g00003 376 ProSiteProfiles Zinc finger RING-type profile. 162 201 IPR001841 -
Vium11837g00003 376 PANTHER UNCHARACTERIZED 318 368 - -
Vium11837g00003 376 SMART ring_2 162 200 IPR001841 -
Vium11837g00003 376 Pfam Zinc finger, C3HC4 type (RING finger) 162 200 IPR018957 GO:0046872
Vium11837g00003 376 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Vium11837g00003 376 MobiDBLite consensus disorder prediction 63 148 - -
Vium11837g00003 376 SUPERFAMILY RING/U-box 154 225 - -
Vium11837g00003 376 MobiDBLite consensus disorder prediction 300 318 - -
Vium11837g00003 376 MobiDBLite consensus disorder prediction 259 319 - -
Vium11837g00003 376 MobiDBLite consensus disorder prediction 73 93 - -
Vium11837g00003 376 MobiDBLite consensus disorder prediction 1 23 - -
Vium11837g00003 376 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11837g00003 Vium-Chr11837 21823 24074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11837g00003 73 204 C2H2 Transcription Factor Family AT5G39550 29.323 3.23e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11837g00003 - - gmx:102666585 498.434