Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11803g00004 ATGTTGAAGTCAGTGTCATTTGGACTGTTGTTAACTTGGTTTGTGGTGGTGACATGTGTGTATGGAACAGATGTTCAAAGATGTAACTGTGATGATGAGTGGAGCTTCTGGACTATTGATACCATTCTGGAGTGCCAAAGGGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCTGTTGAGCTGCTTTACTTTGTTAGTTGCTCAAATCTCCCATTCAAATGGGTCCTCTTTGAGTTCATTGCTTTCATTGTACTTTGTGGGATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACATTTCAACTGATGGTGGCAATCACTGTGTTCAAAACTCTCACTGCCTTGGTGTCATGTGCCACTGCTCTAACTCTCCTCACTCTGATCCCTCTGCTGTTGAAAGTGAAGGTTAGGGAGTTTATGCTGAAGAAAAAGACCTGGGATCTTGGCAGGGAGGTTGGCTTCATAATGAAACAGAAGGAGGCTTCGGTTCATGTAAGAATGCTTACTCAAGAGATTCGAAAGTCCTTGGATAGGCACAAGATTCTGTACACCACCTTGGTTGAACTGTCCAAGACACTTGGTTTGCAAAACTGTGCAATTTGGATGCCAAATGATGAGAAAACTGAGATGAACCTTACTCATGAATTGAATGGGAGGAATGCCAACTGTTCTATTCTCATAACTGATCCTGATGTTGCCAGAATCAAGGGGAGTGATGAAGTGAACGTGATTGATTCTGATTCAGTGCTTGCCACTGCCAGCAGTGGAGATTCTGGTGTGGCAGGACCAGTTGCTGCAATCCGAATGCCAATGCTTCGGGTTAGCAATTTCAAAGGGGGAACGCCGGAGCTGAGGCAAACATGTTATGCCGTGTTGGTTTTGATTCTCCCTGTCACGGAGGCTAAATCATGGAGCACTCAAGAGCTGGAGATCATCAAGGTGGTTGCTGATCAGGTGGCGGTGGCTCTGTCTCATGCTGCAATTCTTGAAGAGTCTCATATGATGAGAGGGAAGTTGGAGGAACAAAATCGAGCATTGCAAGTGGAAAAGATTAATGCTATGAGGGCCAACCAGGCCAGAGCAGCATTTCAGAAAGTGATGAGTAATGGAATGGGAAGGCCTATGCACTCAATCTTGGGGCTGCTTTCAGTGATGCAGGAAGAGAATTTAAAGCGAGAACAGAAACTCGTTGTGGATTCTATGTTCAGAACCAGCACTGTCATGTCAAACCTGCTGAATGATGCCATGGACTGGTCATCAAGGGATGATGGAAGATTCCCTTTGGAGATGAAGCCTTTTGGACTGCATGCTATGGTGAAGGATGCAGCTTGCTTTGCCAGGTTCATGTGTGTTTATAGTGGCCTTGGCTTTGTTGTTGATGCCGATAAGTCTTTGCCAGACAATGTTATAGGTGAGGAAAAGAGGGTCTTCCAAGTGCTTCTGCATATGGTTGGGAGTGCAATAAATTGTAACCGAGGAGGAGGGGTTCTTGTGCTCCGAGTTTATGCAGAAACTGGAAGTCAAGGGAGGAGTGACCAGGGTTGGACAAATTGGAGACCAAGCTCTTCAAATGGGGATGTAAATATCAGATTTGAGATAGGGATCAAAACTGGTGATTCTGAAATGGACAATCCAGTTCCTTCAGGGCACCTTCCTGGTACAATGCGTGCTACTGATACGGTTGAGCAAAGATTGAGCTTCAGCATTTGCAAGAGGATAATTCAGTTGATGCAAGGAAACATATGGTTTGTACCAAACGGTGAAGGTGATCCTCAGGTAATGGCCATTTCTCTACGGTTTCAAGTGCAGCGATCTGTTGCTGTGTCCATGAGTGAAACTGGGGAAAGTTCCGAGGCGTCAAATTCGAACTCATTTTTCAGAGGTCTACAAGTGTTGTTGGTGGAGAACGATGATGTAAATAGAGCGGTGACTCAGAAGTTGCTGCAGAAACTAGGGTGCTGTGTGACTTGTGTTTGTTCTGGAATCGAATGTCTGAGTGTGATCGGAGCTGGTGGATGCTCCTTTCAAGTGATTGTTTTGGATGTTCACATGCCTGAGCTTGATGGGTTTGAAGTTGCATCAAGGCTTCGCAAGTTCGGCAGCAGAAACTGGCCGGTGATTGTGGCCTTGACTGCAAGCACAGAAGATTTCTGGGAAAAATGCATGCAAGTTGGCATCAATGGAGTCATAAGAAAACCGCTTTTGCTGCATGGAATTGCCGCTGAACTCAGAAGAATCCTGTTGCAGGGAAATACTGTCATGTGA 2280 0.4557 MLKSVSFGLLLTWFVVVTCVYGTDVQRCNCDDEWSFWTIDTILECQRVGDFLIAVAYFSIPVELLYFVSCSNLPFKWVLFEFIAFIVLCGMTHLLNGWTYGPHTFQLMVAITVFKTLTALVSCATALTLLTLIPLLLKVKVREFMLKKKTWDLGREVGFIMKQKEASVHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAIWMPNDEKTEMNLTHELNGRNANCSILITDPDVARIKGSDEVNVIDSDSVLATASSGDSGVAGPVAAIRMPMLRVSNFKGGTPELRQTCYAVLVLILPVTEAKSWSTQELEIIKVVADQVAVALSHAAILEESHMMRGKLEEQNRALQVEKINAMRANQARAAFQKVMSNGMGRPMHSILGLLSVMQEENLKREQKLVVDSMFRTSTVMSNLLNDAMDWSSRDDGRFPLEMKPFGLHAMVKDAACFARFMCVYSGLGFVVDADKSLPDNVIGEEKRVFQVLLHMVGSAINCNRGGGVLVLRVYAETGSQGRSDQGWTNWRPSSSNGDVNIRFEIGIKTGDSEMDNPVPSGHLPGTMRATDTVEQRLSFSICKRIIQLMQGNIWFVPNGEGDPQVMAISLRFQVQRSVAVSMSETGESSEASNSNSFFRGLQVLLVENDDVNRAVTQKLLQKLGCCVTCVCSGIECLSVIGAGGCSFQVIVLDVHMPELDGFEVASRLRKFGSRNWPVIVALTASTEDFWEKCMQVGINGVIRKPLLLHGIAAELRRILLQGNTVM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11803g00004 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vium11803g00004 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vium11803g00004 759 SUPERFAMILY CheY-like 631 752 IPR011006 -
Vium11803g00004 759 Gene3D - 162 329 IPR029016 -
Vium11803g00004 759 ProSiteProfiles Response regulatory domain profile. 635 752 IPR001789 GO:0000160
Vium11803g00004 759 Gene3D - 613 751 - -
Vium11803g00004 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 509 IPR036890 -
Vium11803g00004 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Vium11803g00004 759 SMART REC_2 634 748 IPR001789 GO:0000160
Vium11803g00004 759 SUPERFAMILY GAF domain-like 185 331 - -
Vium11803g00004 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Vium11803g00004 759 FunFam Ethylene receptor 4 331 425 - -
Vium11803g00004 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vium11803g00004 759 Gene3D - 330 427 - -
Vium11803g00004 759 Pfam Response regulator receiver domain 636 739 IPR001789 GO:0000160
Vium11803g00004 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 754 - -
Vium11803g00004 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 430 IPR036097 GO:0000155|GO:0007165
Vium11803g00004 759 CDD REC_ETR-like 634 748 - -
Vium11803g00004 759 Gene3D - 428 612 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11803g00004 Vium-Chr11803 23883 27830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11803g00004 24 752 Miscellaneous Gene Families AT3G04580 53.763 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium11803g00004 GAF 2.9e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11803g00004 K14509 - gmx:100802948 1200.27