Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11803g00001 ATGGACCTTTCCATCAACGAGAGAAGCTTCGGCAGAGAAAGAGAAGATGAAGAGGAAGAAGATAGAGACAACGGCGATGAACCCAAAGAGGGTGCTGTCGAGGTTGGAACTCGCAGGCCCAGAGGGAGACCACCGGGCTCCAAGAACAAGCCCAAACCACCCATCTTTGTCACCAGGGACAGCCCAAACTCCCTCAGAAGCCATGTCATGGAGGTTGCCGGTGGCGCAGACGTCGCCGAAAGCGTCGCCCAGTTCGCTCGCCGCCGTCAGCGTGGGGTGTGTGTTCTCAGTGGGAGCGGTTCTGTTGCCAACGTCACTCTCCGGCAACCGGCAGCACCGGGAGCGGTTGTGGCACTGCATGGAAGGTTTGAGATTTTATCCCTAACCGGAGCGTTTCTGCCTGGCCCTGCTCCGCCAGGTGCCACCGGACTTACTGTGTATCTGGCCGGAGGACAGGGCCAGGTTGTAGGAGGAAGCGTTGTTGGTCCTCTTGTGGCAGCTGGACCAGTGATGATTATAGCTGCCACTTTTGCTAATGCTACATATGAGAGGTTGCCACTTGAAGAGGAGGATGAAGACGGTGGCGGTGGTGGCAGTGTCCAAGGAGGAAGTACTCTGGGAGGGTCTCCTCCTGGAATCGGTAGCAGTGGCGGTGGTGGTGGTGACGGTGTGAGTGGTGGGAGCCACTTGCCCGGTGGGATTCCCGATCCTTCTTCTTTGCCTTTGTATAACCTTCCACCAAATCTTCTATCCAATGGAGGAGGCCCAGTGGGGCATGAGGCTTATGCTTGGGCACATGGCCATGGAAGAACACCTTTCTGA 822 0.5693 MDLSINERSFGREREDEEEEDRDNGDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGPLVAAGPVMIIAATFANATYERLPLEEEDEDGGGGGSVQGGSTLGGSPPGIGSSGGGGGDGVSGGSHLPGGIPDPSSLPLYNLPPNLLSNGGGPVGHEAYAWAHGHGRTPF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11803g00001 273 FunFam AT-hook motif nuclear-localized protein 65 192 - -
Vium11803g00001 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 266 IPR014476 GO:0003680
Vium11803g00001 273 MobiDBLite consensus disorder prediction 1 15 - -
Vium11803g00001 273 MobiDBLite consensus disorder prediction 1 63 - -
Vium11803g00001 273 Gene3D - 65 193 - -
Vium11803g00001 273 MobiDBLite consensus disorder prediction 188 239 - -
Vium11803g00001 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 62 191 - -
Vium11803g00001 273 ProSiteProfiles PPC domain profile profile. 62 201 IPR005175 -
Vium11803g00001 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 66 178 IPR005175 -
Vium11803g00001 273 CDD DUF296 66 149 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11803g00001 Vium-Chr11803 7940 9898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11803g00001 28 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 67.742 2.53e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11803g00001 - - gmx:102663643 309.686