Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1179g00001 ATGGCGAGAATCCTTGGAGGAAAGTATAAAATCGGTGAAAAAATTGGGAGCGGATCATTTGGTGAAATTTACATTGGATCACATATAGATACTTCTGAAATCGTAGCCATCAAAATGGAGAGCAAGAAAACCAATCAACCACAGCTATTGTACGAGTGCAATTTATATAGTATTCTTCAAGGAGGAAGTGGAATTCCAAGAATGAAATGGTGTGGCACTGAAGCGGACAATAATGTTCTTGTTATCGAACTTCTGGGACCAAGTCTTGAAGATCTCTTTTACTTCTGTGGCAATAAATTATCTCTCAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACACGGATAGAATATATACATTCCAAAGGATTTTTGCATAGAGACATCAAACCCGATAACTTCCTTATGGGTCTCGGAAAGAAAGCAAATCAGATTTACATGATTGACTTTGGACTAGCAAAAAGATACAGGGATCCCATCACAAATAAGCATATCCCTTACAGAGAAAACAAAGGTTTAACAGGGACTGCCCGTTATGCAAGTTGCAATACTCACTCAGGAATTGAGCAAAGTCGTCGAGATGATTTGGAGTCTCTTGGCTATGTTTTAATGTACTTTTTAAGAGGAAGTCTTCCATGGCAAGGTTTGCAAGCTGCCACCAAAAGACAAAAGTATGATCAAATTTGCAAAAAGAAGTTATCAACGCCCATTGAG 714 0.3824 MARILGGKYKIGEKIGSGSFGEIYIGSHIDTSEIVAIKMESKKTNQPQLLYECNLYSILQGGSGIPRMKWCGTEADNNVLVIELLGPSLEDLFYFCGNKLSLKTVLMLADQMLTRIEYIHSKGFLHRDIKPDNFLMGLGKKANQIYMIDFGLAKRYRDPITNKHIPYRENKGLTGTARYASCNTHSGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAATKRQKYDQICKKKLSTPIE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1179g00001 238 SUPERFAMILY Protein kinase-like (PK-like) 4 238 IPR011009 -
Vium1179g00001 238 ProSiteProfiles Protein kinase domain profile. 9 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1179g00001 238 SMART serkin_6 9 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1179g00001 238 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1179g00001 238 Gene3D Transferase(Phosphotransferase) domain 1 1 238 - -
Vium1179g00001 238 PANTHER CASEIN KINASE-RELATED 8 238 - -
Vium1179g00001 238 FunFam CK1 family protein kinase 1 238 - -
Vium1179g00001 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium1179g00001 238 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1179g00001 Vium-Chr1179 40 13309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1179g00001 2 213 Miscellaneous Gene Families AT3G23000 27.679 2.31e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium1179g00001 Pkinase 1.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1179g00001 K08960 - gmx:100782913 439.499