Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1178g00011 ATGGTGCAGAATTTGGATGGTTATGGAGGAGAAGGCTCGCGACCTTGGTGTTTGGAAGGTGATGGGGTGGTGTTTGATGGTGCTCTTAGAGATATTAGGCCAACTCTAGAGAAAGTTATGCAGAAGCTGAAGACTTCCGTTAAAAAAAACAACTGCAATCCTGAGTGGAATGAAGAAAGGACTCTTTCTATAAAGGACGTTACAACCCCGATACGTTTGTCAGTTTATGACAAAGACACATTCTCAGGGGATGACAAAATGGGAGATGCAGACATAGACTTAATACCATATGTTCAATCTGTGAGAATGGGATGGACTAACCTTCCAAATGGTACTGTAGTGAGGATCATTCAACCAGATGAAACTAATTGCCTTGCCAAAGAAAGCAACTGCGTCTGGCAAAATGAAAACATCGTCCAAGAAATGGTTTTGAAATTGAGAAATGTTGAGAGTGGGGAAATTGTTGTCCAAATAGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACATCTCGATCTTTAA 525 0.4114 MVQNLDGYGGEGSRPWCLEGDGVVFDGALRDIRPTLEKVMQKLKTSVKKNNCNPEWNEERTLSIKDVTTPIRLSVYDKDTFSGDDKMGDADIDLIPYVQSVRMGWTNLPNGTVVRIIQPDETNCLAKESNCVWQNENIVQEMVLKLRNVESGEIVVQIEWVDVIGCKGLSHLDL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1178g00011 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 40 166 IPR044562 -
Vium1178g00011 174 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Vium1178g00011 174 Gene3D C2 domain 31 165 IPR035892 -
Vium1178g00011 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 110 IPR035892 -
Vium1178g00011 174 Pfam C2 domain 41 104 IPR000008 -
Vium1178g00011 174 SMART C2_3c 21 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1178g00011 Vium-Chr1178 136503 137797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1178g00011 42 171 C2H2 Transcription Factor Family AT1G70790 57.576 4.23e-51 159