Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1178g00010 ATGGACAATAGTATTCTGGGACTTCTCAAACTTCGAATTATAAGAGGTTATGATCTTGCAATTCGCGATGCCATTAAAGGACGTGCCAGTGACCCTTATGTCGTCGTCAGCATGGGCGATCAGAAGCTGAAGACTTCCGTTAAAAAAAACAACTGCAATCCTGAGTGGAATGAAGAAAGGACTCTTTCTATAAAGGACGTTACAACCCCGATACGTTTGTCAGTTTATGACAAAGACACATTCTCAGGGGATGACAAAATGGGAGATGCAGACATAGACTTAATACCATATGTTCAATCTGTGAGAATGGGATGGACTAACCTTCCAAATGGTACTGTAGTGAGGATCATTCAACCAGATGAAACTAATTGCCTTGCCAAAGAAAGCAACTGCGTCTGGCAAAATGAAAACATCGTCCAAGAAATGGTTTTGAAATTGAGAAATGTTGAGAGTGGGGAAATTGTTGTCCAAATAGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACATCTCGATCTTTAA 525 0.4057 MDNSILGLLKLRIIRGYDLAIRDAIKGRASDPYVVVSMGDQKLKTSVKKNNCNPEWNEERTLSIKDVTTPIRLSVYDKDTFSGDDKMGDADIDLIPYVQSVRMGWTNLPNGTVVRIIQPDETNCLAKESNCVWQNENIVQEMVLKLRNVESGEIVVQIEWVDVIGCKGLSHLDL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1178g00010 174 Pfam C2 domain 8 104 IPR000008 -
Vium1178g00010 174 SMART C2_3c 8 106 IPR000008 -
Vium1178g00010 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 111 IPR035892 -
Vium1178g00010 174 Gene3D C2 domain 5 167 IPR035892 -
Vium1178g00010 174 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Vium1178g00010 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 166 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1178g00010 Vium-Chr1178 130137 133640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1178g00010 42 171 C2H2 Transcription Factor Family AT1G70790 57.576 8.88e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1178g00010 - - vum:124825278 278.485