Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1178g00009 ATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTTTGAAGTCTGTGTTTTCTGCACAGGCATCGTTGGTCCCTCTCAGGATTAAGCCAATTACACCATTTGATTTGGTGAGTGAGAAGAGAGATGATAATGCAAATGCCCCTTTTTCTGGTGTGGCAATTGGGGATAAGGAAAAGAATAACAGCAGCAATGCTAGTAATAATAGAGTAGAAGGAAACGGAGTTCCAAAGATTTTTGGGCAAGATTTGAACAGTGTGACTCAATTCAGAGAGAAACTTGCTGTGAGGAAAATGGAAGAGAGGCCGAGGGCGTGGGGAGCTCATCCCAATGGGAATAGTGTTGGTTTTCCAAATGGTATCCATGGTTCTGGTTGGGGGGCCGGTCAAGTTGTGAGACAGCTTGGTCCTCCTGAAATTCATGCTCCTAGGTTGTCCACCTCCGGTGCATTGTCGGTGCCGGAGCTGGCCAATGGCACGAGGCATGATTTTGTGCATAACAATTATCAGCAGCAGCAACGGAAGGCTCAGATGCAAATTGATTTCTCAGGAGCAACTTCAAGGGCTTCAGGGAGATCAATCATTGCGGAATCTGAGATTTCTGATGTTGAGGCATCGTGCAAGGAGGAGAGAGCGAATGTTGCCGATGACAGGAGGCCGAGGAAACGGGGAAGGAAGCCGGCCAATGGAAGGGAGGAGCCCCTCAACCATGTGGAGGCAGAGAGGCAAAGGAGGGAGAAGCTAAACCAGTGGTTCTATGCCCTGCGTGCGGTTGTTCCAAATATCTCAAAGATGGACAAAGCATCTCTATTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACGATGGAGGCTAGGTGGCGGCGACCTTGCGTTGGAGGTTCGACAGCTATCTGCGTTTCCCCTTATGTGTTTCTGTACTGTTAG 966 0.4907 MGVVEMGSVRMVGESFELLQALKSVFSAQASLVPLRIKPITPFDLVSEKRDDNANAPFSGVAIGDKEKNNSSNASNNRVEGNGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGAHPNGNSVGFPNGIHGSGWGAGQVVRQLGPPEIHAPRLSTSGALSVPELANGTRHDFVHNNYQQQQRKAQMQIDFSGATSRASGRSIIAESEISDVEASCKEERANVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQWFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMEARWRRPCVGGSTAICVSPYVFLYC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1178g00009 321 Gene3D - 233 302 IPR036638 GO:0046983
Vium1178g00009 321 MobiDBLite consensus disorder prediction 65 80 - -
Vium1178g00009 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Vium1178g00009 321 PANTHER MYC 2 299 IPR045084 GO:0003700|GO:0006355
Vium1178g00009 321 SMART finulus 246 295 IPR011598 GO:0046983
Vium1178g00009 321 MobiDBLite consensus disorder prediction 54 85 - -
Vium1178g00009 321 CDD bHLH_AtAIB_like 237 299 - -
Vium1178g00009 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 305 IPR036638 GO:0046983
Vium1178g00009 321 MobiDBLite consensus disorder prediction 216 249 - -
Vium1178g00009 321 Pfam Helix-loop-helix DNA-binding domain 244 290 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1178g00009 Vium-Chr1178 127753 128718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1178g00009 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 43.831 3.24e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1178g00009 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1178g00009 - - vum:124826269 627.861