Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1178g00003 ATGGCAACACTGTACTTTGACCCTAAGCCAATTTACTGCTTTTGTTGCGGCACCAGCATCAGGCGTAATGCATGTTATTACTATAGAAGAGAAGAAGAGGACACGCAGAATTGCTTTTGTACAACATGCTATAAGAATACCCGAGGTGGGATCATCACATTCAACGGGACAACTGTTTCCAAGACCGATCTTATCAAAAATAAAAATGATAGAGAATGTGAAGAAGCGTGGGTTCAATGCAGTAAATGCAAAAGTTGGCAGCATCACGTATGCGCACTCTATAACAATACAAGAGATTTGGAAAACAGTGCTGAATATCTTTGCCTTTTATGCTGCCTAAACGAAAATAGAAATGATGTGCGTGTACCCTATGATGCTAAAGACTTGCCGAGAACCATGCTTAGTGACCACATAGAAGGGAGGCTTTTGAAGCGTCTCGGTCAAATTGAAAGGAATAAAAATCCAGAGAAAGTTTTTGTAGCAGACAATCTTTCTGTTAGGGTTGTGCTATCTGTGGACAAACATATTGAAGTGAAGAAACAATTTCTCGATATCTTTGAGGAGGATAATTATCCTGCAGAGTTTTCTTATGCTTCAAAAGTTATTCTTCTGTTTCAAAAGATTGATGGAGTGGATGTGTGCCTCTTTGCAATGTATGCTCAAGAGTTCGGCTCAGAATGCGGCTATCCAAATCAGCGTTCTATATATATTTCATATCTCGATTCGGTTAAGTATTTTAGACCCGAAATACATATCTCGGCTAGAGAATCTCTCCGTACCTTTGTTTACCATGAAATATTGATTGGATATCTTGATTTTTGCAAGAAAAGAGGTTTTACAACTTGTTACATATGGTCATGTCCACCTATAAAGGGAGATGATTATATATTCTACTGCCGTCCTGAATCTCAAAAAACTCCGAAGAAAAATCAACTACGACATTGGTATCATTCAGCCCTAAGAAAAGCTGTTGAAGAGGATATTGTTGTTGGTTTATCTAACCTATACGATCATTTCTTTCTTCCTACCGGAAAATGTGAATCCAAGGTAACAGCTGCTCGTTTGCCTTACTTTGACGGAGACTTCTGGTCTAATGCTGCTATGGATAAAGCCAGCCAGATTGAACAGCATACTGCAGGAAACCGTGAAAAGATGCTGAAATTAATACCAAACAGATCTTTGAAGTCGATGGGATGGGTAAATCTTTCTAAAGAAACTGCCAAAGATATTCTAGTGATGCAGAAGCTGAGACAAACCATATCACCTTTCAAGGAAGATTTTATTGTAGTTCAACTTCAGTATGTTTGCATCCACTGCCATAAAGTGATAGAGTGTGGGAAGCGATGGTTTTGCAAGGAATGCAAGATATTTCAGGAGTGTGAAAGATGTCACACTGCTGATTCACACACTTCTGTGAAAGGCGAGAAGCACAAACTTTGTGAGGACCTTACGGGACGCATACTTCGTGATACAACTAAGGAGAAAGATATCATCTTTAATAATGGGTTATTTGATACCAGATATAACTTTCTTAGCTTTTGCCAAAGGAATAGGTTTCAGTTTGATTCACTTCGTCGAGCCAAGTATTCCTCAATGATGATCCTCCATTTTTTGAGCAACCCTATTGGAATAAATTGCCAAGTTTGCTGTAAACCCATTGTTAGCAAGTGTTACTGGAAATGTGGGAATTGCCCGGAGTTCACTGTCTGTTCTGCATGCCATATCGCCAGAGGTTCCAAATGCCATGCACACACGTTGAGTGAAACTTGTTCGGCCGCACTATCTTCTACTGGGAGTGAAAAATTAAAGCAGAATACAGCAGTGGAACTGCTGGATGTTATAAAGCACGCATCACAGTGTCATTCAACTCAAACTCAACCATGCACGTACCCAAACTGCTTTAAAATAAGAAAGTTGTTTTCTCATGCAAGTAGGTGTACTGTTCGAGTTTCTGGAGGATGCCAACATTGTAAGAAGGTTTGGCAGGCAATAGCTTTACACTCAAGGAATTGTAGAGACTCAGCATGTCGCGTTCCTCGTTGCATGGATATGAAGAAGCAAGCAGAGTTGCAGCATGCAATCTGA 2085 0.399 MATLYFDPKPIYCFCCGTSIRRNACYYYRREEEDTQNCFCTTCYKNTRGGIITFNGTTVSKTDLIKNKNDRECEEAWVQCSKCKSWQHHVCALYNNTRDLENSAEYLCLLCCLNENRNDVRVPYDAKDLPRTMLSDHIEGRLLKRLGQIERNKNPEKVFVADNLSVRVVLSVDKHIEVKKQFLDIFEEDNYPAEFSYASKVILLFQKIDGVDVCLFAMYAQEFGSECGYPNQRSIYISYLDSVKYFRPEIHISARESLRTFVYHEILIGYLDFCKKRGFTTCYIWSCPPIKGDDYIFYCRPESQKTPKKNQLRHWYHSALRKAVEEDIVVGLSNLYDHFFLPTGKCESKVTAARLPYFDGDFWSNAAMDKASQIEQHTAGNREKMLKLIPNRSLKSMGWVNLSKETAKDILVMQKLRQTISPFKEDFIVVQLQYVCIHCHKVIECGKRWFCKECKIFQECERCHTADSHTSVKGEKHKLCEDLTGRILRDTTKEKDIIFNNGLFDTRYNFLSFCQRNRFQFDSLRRAKYSSMMILHFLSNPIGINCQVCCKPIVSKCYWKCGNCPEFTVCSACHIARGSKCHAHTLSETCSAALSSTGSEKLKQNTAVELLDVIKHASQCHSTQTQPCTYPNCFKIRKLFSHASRCTVRVSGGCQHCKKVWQAIALHSRNCRDSACRVPRCMDMKKQAELQHAI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1178g00003 694 SMART KAT11_2 146 443 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium1178g00003 694 Pfam TAZ zinc finger 610 681 IPR000197 -
Vium1178g00003 694 PANTHER CBP/P300-RELATED 3 691 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium1178g00003 694 SMART TAZ_2 601 682 IPR000197 -
Vium1178g00003 694 Gene3D TAZ domain 594 693 IPR035898 -
Vium1178g00003 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 112 IPR013083 -
Vium1178g00003 694 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 123 543 IPR031162 GO:0004402
Vium1178g00003 694 SUPERFAMILY RING/U-box 528 585 - -
Vium1178g00003 694 SUPERFAMILY TAZ domain 603 686 IPR035898 -
Vium1178g00003 694 SUPERFAMILY RING/U-box 411 473 - -
Vium1178g00003 694 ProSiteProfiles Zinc finger TAZ-type profile. 595 684 IPR000197 -
Vium1178g00003 694 Pfam Histone acetylation protein 161 368 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium1178g00003 694 SUPERFAMILY FYVE/PHD zinc finger 74 113 IPR011011 -
Vium1178g00003 694 ProSitePatterns Zinc finger PHD-type signature. 38 111 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1178g00003 Vium-Chr1178 26179 30054 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium1178g00003 HAT_KAT11 4e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1178g00003 K04498 - gmx:102664049 1005.74